task_operations Directory Reference

Directory dependency graph for task_operations:

Files
file	DesignAroundOperation.cc [code]
file	DesignAroundOperation.fwd.hh [code]
file	DesignAroundOperation.hh [code]
	TaskOperation class that restricts a chain to repacking.
file	DesignAroundOperationCreator.hh [code]
file	InterfaceTaskOperation.cc [code]
	Base class for TaskOperations that will work with docking to define an interface.
file	InterfaceTaskOperation.fwd.hh [code]
file	InterfaceTaskOperation.hh [code]
	Base class for TaskOperations that will work with docking to define an interface.
file	JointSequenceOperation.cc [code]
	set designable residues to those observed in a set of structures
file	JointSequenceOperation.fwd.hh [code]
file	JointSequenceOperation.hh [code]
	set every position to be designable to residues observed in a set of structures
file	JointSequenceOperationCreator.hh [code]
file	LayerOperations.cc [code]
file	LayerOperations.hh [code]
file	LayerOperationsCreator.hh [code]
file	LimitAromaChi2Operation.cc [code]
	eliminate aromatic rotamers, of which chi2 are around 0, 180 degree. Chi2=0, 180 rotamers of aromatic residues ( PHE, TYR, HIS ) are not observed in nature very much, however Rosetta really like them. This is really pathology. For design purpose, we don't need them actually.
file	LimitAromaChi2Operation.fwd.hh [code]
file	LimitAromaChi2Operation.hh [code]
	rotamer set operation forward declaration
file	LimitAromaChi2OperationCreator.hh [code]
file	ModifyAnnealer.cc [code]
	Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
file	ModifyAnnealer.fwd.hh [code]
	Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
file	ModifyAnnealer.hh [code]
	Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
file	ModifyAnnealerCreator.hh [code]
file	PreventChainFromRepackingOperation.cc [code]
file	PreventChainFromRepackingOperation.fwd.hh [code]
file	PreventChainFromRepackingOperation.hh [code]
	TaskOperation class that restricts a chain to repacking.
file	PreventChainFromRepackingOperationCreator.hh [code]
file	PreventResiduesFromRepackingOperation.cc [code]
file	PreventResiduesFromRepackingOperation.fwd.hh [code]
file	PreventResiduesFromRepackingOperation.hh [code]
	TaskOperation class that prevents a vector of residues indices from repacking parsed as a string that is comma delimited ",".
file	PreventResiduesFromRepackingOperationCreator.hh [code]
file	ProteinCoreResFilter.cc [code]
file	ProteinCoreResFilter.hh [code]
file	ProteinCoreResFilterCreator.hh [code]
file	ProteinInterfaceDesignOperation.cc [code]
file	ProteinInterfaceDesignOperation.fwd.hh [code]
file	ProteinInterfaceDesignOperation.hh [code]
	TaskOperation class that restricts a chain to repacking.
file	ProteinInterfaceDesignOperationCreator.hh [code]
file	ReadResfileFromDB.cc [code]
file	ReadResfileFromDB.fwd.hh [code]
	Forward declaration of the ReadResfileFromDB class.
file	ReadResfileFromDB.hh [code]
	read a refile indexed by the input structure tag from a supplied relational database
file	ReadResfileFromDBCreator.hh [code]
file	RestrictByCalculatorsOperation.cc [code]
	A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
file	RestrictByCalculatorsOperation.fwd.hh [code]
	A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
file	RestrictByCalculatorsOperation.hh [code]
	A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
file	RestrictByCalculatorsOperationCreator.hh [code]
file	RestrictChainToRepackingOperation.cc [code]
file	RestrictChainToRepackingOperation.fwd.hh [code]
file	RestrictChainToRepackingOperation.hh [code]
	TaskOperation class that restricts a chain to repacking.
file	RestrictChainToRepackingOperationCreator.hh [code]
file	RestrictIdentitiesAtAlignedPositions.cc [code]
file	RestrictIdentitiesAtAlignedPositions.fwd.hh [code]
file	RestrictIdentitiesAtAlignedPositions.hh [code]
file	RestrictIdentitiesAtAlignedPositionsCreator.hh [code]
file	RestrictInterGroupVectorOperation.cc [code]
file	RestrictInterGroupVectorOperation.fwd.hh [code]
file	RestrictInterGroupVectorOperation.hh [code]
	restricts design to only those residues between two groups of structures
file	RestrictInterGroupVectorOperationCreator.hh [code]
file	RestrictNativeResiduesOperation.cc [code]
	Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
file	RestrictNativeResiduesOperation.fwd.hh [code]
file	RestrictNativeResiduesOperation.hh [code]
	Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
file	RestrictNativeResiduesOperationCreator.hh [code]
file	RestrictNonSurfaceToRepackingOperation.cc [code]
file	RestrictNonSurfaceToRepackingOperation.fwd.hh [code]
file	RestrictNonSurfaceToRepackingOperation.hh [code]
file	RestrictNonSurfaceToRepackingOperationCreator.hh [code]
file	RestrictOperationsBase.cc [code]
	Base class for PoseMetricCalculator-using TaskOperations.
file	RestrictOperationsBase.fwd.hh [code]
	Base class for PoseMetricCalculator-using TaskOperations.
file	RestrictOperationsBase.hh [code]
	Base class for PoseMetricCalculator-using TaskOperations.
file	RestrictResiduesToRepackingOperation.cc [code]
file	RestrictResiduesToRepackingOperation.fwd.hh [code]
file	RestrictResiduesToRepackingOperation.hh [code]
	TaskOperation class that restricts a vector of Size defined residues to repacking when parsed, it takes in a string and splits by ",".
file	RestrictResiduesToRepackingOperationCreator.hh [code]
file	RestrictToAlignedSegments.cc [code]
file	RestrictToAlignedSegments.fwd.hh [code]
file	RestrictToAlignedSegments.hh [code]
file	RestrictToAlignedSegmentsCreator.hh [code]
file	RestrictToCDRH3Loop.cc [code]
file	RestrictToCDRH3Loop.fwd.hh [code]
	Forward declaration of the RestrictToCDRH3Loop class.
file	RestrictToCDRH3Loop.hh [code]
	This class allows the selection for packing of the Antibody CDR-H3 loop by taking advantage of the PDB numbering schemes that are commonly used for Antibodies.
file	RestrictToCDRH3LoopCreator.hh [code]
file	RestrictToInterface.cc [code]
file	RestrictToInterface.fwd.hh [code]
file	RestrictToInterface.hh [code]
file	RestrictToInterfaceCreator.hh [code]
file	RestrictToInterfaceOperation.cc [code]
	TaskOperation class that finds an interface and leaves it mobile in the PackerTask.
file	RestrictToInterfaceOperation.fwd.hh [code]
	Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
file	RestrictToInterfaceOperation.hh [code]
	TaskOperation class that finds an interface and makes it mobile in the PackerTask.
file	RestrictToInterfaceOperationCreator.hh [code]
file	RestrictToInterfaceVectorOperation.cc [code]
	TaskOperation class that finds an interface based on: core/pack/task/operation/util/interface_vector_calculate.hh and leaves it mobile in the PackerTask.
file	RestrictToInterfaceVectorOperation.fwd.hh [code]
	Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
file	RestrictToInterfaceVectorOperation.hh [code]
	TaskOperation class that finds an interface based on InterfaceVectorDefinition and leaves it mobile in the PackerTask. Serves mostly to wrap InterfaceVectorDefinition into a TaskOperation. see src/core/pack/task/operation/util/interface_vector_calculate.hh.
file	RestrictToInterfaceVectorOperationCreator.hh [code]
file	RestrictToLoopsAndNeighbors.cc [code]
file	RestrictToLoopsAndNeighbors.fwd.hh [code]
	Forward declaration of the RestrictToLoopsAndNeighbors class.
file	RestrictToLoopsAndNeighbors.hh [code]
	This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A.
file	RestrictToLoopsAndNeighborsCreator.hh [code]
	Creator class for the RestrictToLoopsAndNeighbors TaskOperation.
file	RestrictToNeighborhoodOperation.cc [code]
	TaskOperation class that finds a neighborhood and leaves it mobile in the PackerTask.
file	RestrictToNeighborhoodOperation.fwd.hh [code]
	Forward declaration of a TaskOperation class that finds a neighborhood; leaves it mobile in the PackerTask.
file	RestrictToNeighborhoodOperation.hh [code]
	TaskOperation class that finds a neighborhood and makes it mobile in the PackerTask.
file	RestrictToNeighborhoodOperationCreator.hh [code]
file	RestrictToTerminiOperation.cc [code]
file	RestrictToTerminiOperation.fwd.hh [code]
	Restrict to packing only the residues at either or both termini.
file	RestrictToTerminiOperation.hh [code]
file	RestrictToTerminiOperationCreator.hh [code]
file	SelectBySASAOperation.cc [code]
file	SelectBySASAOperation.fwd.hh [code]
file	SelectBySASAOperation.hh [code]
file	SelectBySASAOperationCreator.hh [code]
file	SeqprofConsensusOperation.cc [code]
	set designable residues to those observed in sequence profile
file	SeqprofConsensusOperation.fwd.hh [code]
file	SeqprofConsensusOperation.hh [code]
file	SeqprofConsensusOperationCreator.hh [code]
file	SetIGTypeOperation.cc [code]
	Task operation to set interaction graph type (linmem, lazy or double lazy)
file	SetIGTypeOperation.fwd.hh [code]
	Task operation to set Interaction graph Type.
file	SetIGTypeOperation.hh [code]
	Task operation to set interaction graph type (linear memory, lazy or double lazy)
file	SetIGTypeOperationCreator.hh [code]
file	ThreadSequenceOperation.cc [code]
file	ThreadSequenceOperation.fwd.hh [code]
file	ThreadSequenceOperation.hh [code]
	TaskOperation class that restricts a chain to repacking.
file	ThreadSequenceOperationCreator.hh [code]