chemical Directory Reference

Directory dependency graph for chemical:

Directories
directory	carbohydrates
directory	orbitals
directory	rna
directory	sdf

Files
file	AA.cc [code]
	translation between amino acid enum and string name/one letter char codes
file	AA.hh [code]
file	Adduct.cc [code]
	definition of residue adduct class
file	Adduct.fwd.hh [code]
	declaration of class for adducts on residues
file	Adduct.hh [code]
	declaration of implementation class for residue adducts
file	adduct_util.cc [code]
file	adduct_util.hh [code]
file	Atom.cc [code]
file	Atom.fwd.hh [code]
file	Atom.hh [code]
file	AtomICoor.cc [code]
	declaration of implementation class for abstract class Residue
file	AtomICoor.fwd.hh [code]
	declaration of implementation class for abstract class Residue
file	AtomICoor.hh [code]
	declaration of implementation class for abstract class Residue
file	AtomType.cc [code]
file	AtomType.fwd.hh [code]
file	AtomType.hh [code]
file	AtomTypeDatabaseIO.cc [code]
	Write chemical information associated with atom types to a database.
file	AtomTypeDatabaseIO.fwd.hh [code]
file	AtomTypeDatabaseIO.hh [code]
file	AtomTypeSet.cc [code]
file	AtomTypeSet.fwd.hh [code]
file	AtomTypeSet.hh [code]
file	automorphism.cc [code]
file	automorphism.hh [code]
file	ChemicalManager.cc [code]
	Chemical manager class.
file	ChemicalManager.fwd.hh [code]
file	ChemicalManager.hh [code]
	Chemical manager class header.
file	CSDAtomType.hh [code]
file	CSDAtomTypeSet.cc [code]
file	CSDAtomTypeSet.fwd.hh [code]
file	CSDAtomTypeSet.hh [code]
file	Element.cc [code]
	Element class.
file	Element.fwd.hh [code]
file	Element.hh [code]
	Molecular mechanics atom type class.
file	ElementSet.cc [code]
file	ElementSet.fwd.hh [code]
file	ElementSet.hh [code]
file	IdealBondLengthSet.cc [code]
file	IdealBondLengthSet.fwd.hh [code]
file	IdealBondLengthSet.hh [code]
file	MMAtomType.cc [code]
	Molecular mechanics atom type class.
file	MMAtomType.fwd.hh [code]
file	MMAtomType.hh [code]
	Molecular mechanics atom type class.
file	MMAtomTypeSet.cc [code]
file	MMAtomTypeSet.fwd.hh [code]
file	MMAtomTypeSet.hh [code]
file	Orbital.cc [code]
file	Orbital.fwd.hh [code]
file	Orbital.hh [code]
file	Patch.cc [code]
file	Patch.fwd.hh [code]
file	Patch.hh [code]
file	PatchOperation.cc [code]
file	PatchOperation.fwd.hh [code]
file	PatchOperation.hh [code]
file	ResConnID.cc [code]
file	ResConnID.fwd.hh [code]
file	ResConnID.hh [code]
file	residue_io.cc [code]
file	residue_io.hh [code]
file	ResidueConnection.cc [code]
file	ResidueConnection.fwd.hh [code]
	declaration of implementation class for abstract class Residue
file	ResidueConnection.hh [code]
	Inter-residue chemical bond connection point class declaration.
file	ResidueDatabaseIO.cc [code]
file	ResidueDatabaseIO.fwd.hh [code]
file	ResidueDatabaseIO.hh [code]
file	ResidueLoader.cc [code]
file	ResidueLoader.fwd.hh [code]
	implementation of the Residue Loader
file	ResidueLoader.hh [code]
file	ResidueLoaderCreator.hh [code]
file	ResidueLoaderOptions.cc [code]
	forward headers for the Residue Loader Options
file	ResidueLoaderOptions.fwd.hh [code]
	forward headers for the Residue Loader Options
file	ResidueLoaderOptions.hh [code]
	forward headers for the Residue Loader Options
file	ResidueLoaderOptionsCreator.hh [code]
file	ResidueSelector.cc [code]
file	ResidueSelector.fwd.hh [code]
file	ResidueSelector.hh [code]
file	ResidueSupport.cc [code]
file	ResidueSupport.hh [code]
	support functions for class residue; functions that should not be included as part of the class.
file	ResidueType.cc [code]
	A class for defining a type of residue.
file	ResidueType.fwd.hh [code]
	declaration of implementation class for abstract class Residue
file	ResidueType.hh [code]
file	ResidueTypeSet.cc [code]
	ResidueTypeSet class.
file	ResidueTypeSet.fwd.hh [code]
file	ResidueTypeSet.hh [code]
file	types.hh [code]
file	util.cc [code]
	Utilities for modifying and utilizing Residues and other core::chemical classes.
file	util.hh [code]
	Utilities for modifying and utilizing Residues and other core::chemical classes.
file	VariantType.cc [code]
	VariantTypes are used by Patches.
file	VariantType.fwd.hh [code]
file	VariantType.hh [code]