rna Directory Reference

Directory dependency graph for rna:

Directories
directory	chemical_shift

Files
file	Gaussian_parameter.hh [code]
	very simple class that records amplitude, center, and width of a Gaussian
file	RG_Energy_RNA.cc [code]
file	RG_Energy_RNA.hh [code]
file	RG_Energy_RNACreator.hh [code]
	Declaration for the class that connects RG_Energy_RNA with the ScoringManager.
file	RNA_AtomVDW.cc [code]
file	RNA_AtomVDW.fwd.hh [code]
file	RNA_AtomVDW.hh [code]
	Information on which atoms to use for computing clashes.
file	RNA_BaseBaseEnergy.cc [code]
	Statistically derived rotamer pair potential class implementation.
file	RNA_BaseBaseEnergy.fwd.hh [code]
file	RNA_BaseBaseEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_BaseDoubletClasses.hh [code]
file	RNA_BulgeEnergy.cc [code]
file	RNA_BulgeEnergy.fwd.hh [code]
file	RNA_BulgeEnergy.hh [code]
	Score function class.
file	RNA_BulgeEnergyCreator.hh [code]
file	RNA_CentroidInfo.cc [code]
file	RNA_CentroidInfo.fwd.hh [code]
file	RNA_CentroidInfo.hh [code]
file	RNA_DataBackboneEnergy.cc [code]
	Statistically derived rotamer pair potential class implementation.
file	RNA_DataBackboneEnergy.fwd.hh [code]
file	RNA_DataBackboneEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_DataBackboneEnergyCreator.hh [code]
	Declaration for the class that connects RNA_DataBackboneEnergy with the ScoringManager.
file	RNA_DataInfo.cc [code]
file	RNA_DataInfo.fwd.hh [code]
file	RNA_DataInfo.hh [code]
file	RNA_FA_Stack.hh [code]
file	RNA_FilteredBaseBaseInfo.cc [code]
file	RNA_FilteredBaseBaseInfo.fwd.hh [code]
file	RNA_FilteredBaseBaseInfo.hh [code]
file	RNA_FittedTorsionInfo.cc [code]
	Statistically derived torsion information for RNA.
file	RNA_FittedTorsionInfo.hh [code]
	Statistically derived torsion information for RNA.
file	RNA_FullAtomStackingEnergy.cc [code]
file	RNA_FullAtomStackingEnergy.fwd.hh [code]
file	RNA_FullAtomStackingEnergy.hh [code]
file	RNA_FullAtomStackingEnergyCreator.hh [code]
	Declaration for the class that connects RNA_FullAtomStackingEnergy with the ScoringManager.
file	RNA_FullAtomVDW_BasePhosphate.cc [code]
file	RNA_FullAtomVDW_BasePhosphate.fwd.hh [code]
file	RNA_FullAtomVDW_BasePhosphate.hh [code]
	FullAtom VDW energy between the base and phosphate group in the same (intra) nucleotide.
file	RNA_FullAtomVDW_BasePhosphateCreator.fwd.hh [code]
file	RNA_FullAtomVDW_BasePhosphateCreator.hh [code]
file	RNA_LJ_BaseEnergy.cc [code]
file	RNA_LJ_BaseEnergy.fwd.hh [code]
file	RNA_LJ_BaseEnergy.hh [code]
	van der waals over aromatics
file	RNA_LJ_BaseEnergyCreator.hh [code]
	Declaration for the class that connects RNA_LJ_BaseEnergy with the ScoringManager.
file	RNA_LowResolutionPotential.cc [code]
file	RNA_LowResolutionPotential.fwd.hh [code]
file	RNA_LowResolutionPotential.hh [code]
file	RNA_Mg_Energy.cc [code]
	Statistically derived Mg(2+) binding potential for RNA.
file	RNA_Mg_Energy.hh [code]
	Statistically derived Mg(2+) binding potential for RNA.
file	RNA_Mg_EnergyCreator.hh [code]
	Declaration for the class that connects RNA_Mg_Energy with the ScoringManager.
file	RNA_Mg_KnowledgeBasedPotential.cc [code]
file	RNA_Mg_KnowledgeBasedPotential.fwd.hh [code]
file	RNA_Mg_KnowledgeBasedPotential.hh [code]
	Information on which atoms to use for computing clashes.
file	RNA_PairwiseLowResolutionEnergy.cc [code]
	Statistically derived rotamer pair potential class implementation.
file	RNA_PairwiseLowResolutionEnergy.fwd.hh [code]
file	RNA_PairwiseLowResolutionEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_PairwiseLowResolutionEnergyCreator.hh [code]
	Declaration for the class that connects RNA_PairwiseLowResolutionEnergy with the ScoringManager.
file	RNA_RawBaseBaseInfo.cc [code]
file	RNA_RawBaseBaseInfo.fwd.hh [code]
file	RNA_RawBaseBaseInfo.hh [code]
file	RNA_ScoringInfo.cc [code]
file	RNA_ScoringInfo.fwd.hh [code]
file	RNA_ScoringInfo.hh [code]
file	RNA_SugarCloseEnergy.cc [code]
file	RNA_SugarCloseEnergy.fwd.hh [code]
file	RNA_SugarCloseEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_SugarCloseEnergyCreator.hh [code]
file	RNA_Torsion.fwd.hh [code]
file	RNA_TorsionEnergy.cc [code]
file	RNA_TorsionEnergy.fwd.hh [code]
file	RNA_TorsionEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_TorsionEnergyCreator.hh [code]
	Declaration for the class that connects RNA_TorsionEnergy with the ScoringManager.
file	RNA_TorsionPotential.cc [code]
file	RNA_TorsionPotential.fwd.hh [code]
file	RNA_TorsionPotential.hh [code]
file	RNA_Util.cc [code]
file	RNA_Util.hh [code]
file	RNA_VDW_Energy.cc [code]
	Statistically derived clash check for RNA.
file	RNA_VDW_Energy.fwd.hh [code]
file	RNA_VDW_Energy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_VDW_EnergyCreator.hh [code]
	Declaration for the class that connects RNA_VDW_Energy with the ScoringManager.