- d -

• DaemonIndices : protocols::pack_daemon::DaemonSet
• DaemonList : protocols::pack_daemon::DaemonSet
• DaemonListIter : protocols::pack_daemon::DaemonSet
• DataMap : protocols::fldsgn::BluePrintBDR , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::MatchResidues , protocols::simple_moves::MonteCarloRecover , protocols::simple_moves::MonteCarloTest , protocols::fldsgn::MatchResiduesMover , protocols::toolbox::pose_metric_calculators::FragQualCalculator , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::CircularPermutation , protocols::fldsgn::filters::HSSTripletFilter , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::forge::remodel::RemodelLoopMover , protocols::forge::remodel::RemodelMover , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::match::MatcherMover , protocols::moves::DsspMover , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::PackStatFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::simple_moves::GenericMonteCarloMover , protocols::simple_moves::MakePolyXMover
• dbase_const_iterator : protocols::protein_interface_design::movers::Splice
• DC_lines : core::scoring::DipolarCoupling
• decoy_iterator : protocols::jd2::archive::ArchiveBase
• DensePDInteractionGraphOP : protocols::pack_daemon::DenseIGRepacker
• DependencyEdge : protocols::forge::build::BuildManager
• DependencyEdges : protocols::forge::build::BuildManager
• DerivVectorPair : core::optimization::MinimizerMap
• DesignInfo : protocols::forge::components::BDR , protocols::forge::remodel::RemodelMover
• DesignMoverFoldTreePair : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover
• DesignMoverRealPair : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover
• DesignTaskOP : protocols::flxbb::FlxbbDesign
• DesignTaskSet : protocols::flxbb::FlxbbDesign
• DestructionEvent : core::pose::Pose
• difference_type : boost::unordered_object_pool< T, UserAllocator > , core::io::silent::SilentFileData::iterator , core::io::silent::SilentFileData::const_iterator , core::kinematics::RT , core::kinematics::tree::Atom , protocols::toolbox::OP_const_iterator< const_iterator, SomeOP >
• DimerPairing : protocols::fldsgn::topology::StrandPairingSet , protocols::fldsgn::potentials::sspot::SSPairPotential , protocols::fldsgn::topology::DimerPairings
• DimerPairings : protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential , protocols::fldsgn::topology::StrandPairingSet
• Distance : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• DistanceBoundVector : protocols::noesy_assign::DistanceScoreMover
• DistanceSquared : protocols::flexpack::interaction_graph::OTFFlexbbNode
• DisulfTemplateList : protocols::jumping::DisulfPairingLibrary
• DisulfTemplateMap : protocols::jumping::DisulfPairingLibrary
• DnaDesignDefOP : protocols::motifs::LigandMotifSearch , protocols::motifs::MotifSearch
• DnaDesignDefOPs : protocols::motifs::LigandMotifSearch , protocols::motifs::MotifSearch
• DOF_ID : core::kinematics::tree::Atom , core::conformation::Conformation , core::conformation::symmetry::SymmetryInfo , core::kinematics::AtomTree , core::optimization::DOF_Node , core::kinematics::MoveMap , core::optimization::MinimizerMap , core::pose::Pose , core::scoring::constraints::ConstraintSet , core::kinematics::MinimizerMapBase
• DOF_ID_Map : core::kinematics::MoveMap
• DOF_ID_Mask : core::kinematics::MoveMap , core::kinematics::AtomTree , core::kinematics::tree::Atom
• DOF_IDs : core::conformation::symmetry::SymmetryInfo
• DOF_Map : core::id::DOF_ID_Map< T >
• DOF_Node : core::pack::scmin::AtomTreeSCMinMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap
• DOF_NodeOP : core::pack::scmin::AtomTreeSCMinMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap
• DOF_Nodes : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap
• DOF_TaskMap : protocols::simple_moves::MinMover
• DOF_Type : core::kinematics::MoveMap , core::kinematics::MinimizerMapBase , core::optimization::DOF_Node , core::kinematics::tree::Atom , core::optimization::MinimizerMap , core::kinematics::AtomTree
• DOF_TypeMap : core::kinematics::MoveMap
• DomainMap : core::conformation::Conformation , core::scoring::Energies
• DoubleDensePDInteractionGraphOP : protocols::pack_daemon::DoubleDenseIGRepacker
• DownstreamHitSets : protocols::match::output::CloudPDBWriter
• Dssp : protocols::fldsgn::BluePrintBDR
• DunbrackRotamerSampleData : protocols::match::upstream::FullChiSampleSet , protocols::match::upstream::ProteinUpstreamBuilder , protocols::match::upstream::ProteinSCSampler
• DunbrackRotamerSampleDataVector : protocols::match::upstream::ProteinUpstreamBuilder , protocols::match::upstream::ProteinSCSampler , protocols::match::upstream::FullChiSampleSet