- f -

• FA1Dd : protocols::toolbox::KClusterData
• FA2d : protocols::toolbox::KClusterData , protocols::toolbox::KCluster
• FA2Dd : protocols::toolbox::KClusterData , protocols::toolbox::KCluster
• FA2Pd : protocols::toolbox::KClusterData , protocols::toolbox::KCluster
• FA3Pd : protocols::toolbox::KClusterData
• FArray1_real : core::scoring::SecondaryStructurePotential
• FArray1A_real : core::scoring::SecondaryStructurePotential
• FArray1D_int : protocols::fldsgn::potentials::sspot::SSPairPotential , core::scoring::SecondaryStructurePotential , core::scoring::Strands , core::scoring::Helices , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential
• FArray1D_real : core::scoring::SecondaryStructurePotential , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• FArray2D_int : core::scoring::Strands , core::scoring::Helices
• FArray2D_PackerEnergy : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• FArray2D_real : core::scoring::SecondaryStructurePotential
• FArray3D_Real : core::scoring::dna::DNA_BasePotential
• FArray4D_Real : core::scoring::dna::DNA_BasePotential
• FArray4D_real : core::scoring::SecondaryStructurePotential , protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential
• FASTERInteractionGraphOP : protocols::pack_daemon::FASTER_IG_Repacker
• FeaturesReporterCreatorMap : protocols::features::FeaturesReporterFactory
• FeaturesReporters : protocols::features::Report
• FileList : protocols::comparative_modeling::ThreadingJobInputter
• FileName : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream , core::sequence::ChemicalShiftSequence , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• Filenames : protocols::jd2::MpiFileBuffer
• FileNames : protocols::motifs::MotifLibrary
• Filter : protocols::enzdes::LigDSasaFilter , protocols::enzdes::LigBurialFilter , protocols::enzdes::LigInterfaceEnergyFilter , protocols::enzdes::EnzScoreFilter , protocols::enzdes::DiffAtomSasaFilter , protocols::enzdes::RepackWithoutLigandFilter , protocols::enzdes::EnzdesScorefileFilter , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::simple_filters::ConservedPosMutationFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::ShapeComplementarityFilter
• FilterList : protocols::filters::CombinedFilter
• FilterMap : protocols::filters::FilterFactory
• FilterOP : protocols::enzdes::LigDSasaFilter , protocols::enzdes::LigBurialFilter , protocols::enzdes::LigInterfaceEnergyFilter , protocols::enzdes::EnzScoreFilter , protocols::enzdes::DiffAtomSasaFilter , protocols::enzdes::RepackWithoutLigandFilter , protocols::enzdes::EnzdesScorefileFilter , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::moves::FilterMover , protocols::simple_filters::ConservedPosMutationFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_moves::GenericMonteCarloMover
• Filters_map : protocols::enzdes::RepackWithoutLigandFilter , protocols::forge::remodel::RemodelLoopMover , protocols::toolbox::pose_metric_calculators::FragQualCalculator , protocols::moves::Mover , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::filters::HSSTripletFilter , protocols::enzdes::LigDSasaFilter , protocols::enzdes::LigBurialFilter , protocols::enzdes::LigInterfaceEnergyFilter , protocols::enzdes::EnzScoreFilter , protocols::enzdes::DiffAtomSasaFilter , protocols::simple_filters::PackStatFilter , protocols::enzdes::EnzdesScorefileFilter , protocols::fldsgn::BluePrintBDR , protocols::fldsgn::CircularPermutation , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::FragQualFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::simple_moves::MonteCarloTest , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::forge::remodel::RemodelMover , protocols::simple_moves::MakePolyXMover , protocols::match::MatcherMover , protocols::simple_filters::RangeFilter , protocols::moves::DsspMover , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_moves::MonteCarloRecover , protocols::simple_filters::HolesFilter , protocols::simple_moves::GenericMonteCarloMover
• FilterStructsOP : protocols::flxbb::DesignTask , protocols::flxbb::DesignTask_Normal , protocols::flxbb::FlxbbDesignPack , protocols::flxbb::DesignTask_Layer
• FilterWeightPair : protocols::filters::CombinedFilter
• FirstClassNodeVector : core::pack::interaction_graph::BackgroundNode< V, E, G >
• FitnessFunctionOP : protocols::genetic_algorithm::GeneticAlgorithm
• FixbbRotamerSetsCOP : core::pack::annealer::FASTERAnnealer , core::pack::annealer::RotamerAssigningAnnealer
• FixedBBInteractionGraphCOP : protocols::pack_daemon::PackDaemon
• FixedBBInteractionGraphOP : protocols::pack_daemon::QuickRepacker , protocols::pack_daemon::PackDaemon
• FloatList : protocols::noesy_assign::FloatingResonance
• FoldTree : protocols::nonlocal::SingleFragmentMover , core::conformation::Conformation
• FoldTreeOP : core::conformation::Conformation , protocols::nonlocal::SingleFragmentMover
• FragData : core::fragment::picking_old::vall::VallLibrarian
• FragDataList : core::fragment::picking_old::vall::VallLibrarian
• FragDataOP : core::fragment::picking_old::vall::VallLibrarian
• FragFileCache : core::fragment::FragmentIO
• FragmentMoverOP : protocols::forge::remodel::RemodelLoopMover
• FragmentMoverOPs : protocols::forge::remodel::RemodelLoopMover
• FragRT : core::conformation::Conformation , core::kinematics::AtomTree
• FragSet : protocols::toolbox::pose_metric_calculators::FragQualCalculator
• FragSetCOP : protocols::nonlocal::SmoothPolicy , protocols::nonlocal::UniformPolicy , protocols::nonlocal::Policy , protocols::nonlocal::BiasedFragmentMover , protocols::abinitio::DomainAssembly , protocols::forge::remodel::RemodelLoopMover
• FragSetList : core::fragment::FragSetCollection
• FragSetOP : protocols::nonlocal::SingleFragmentMover , protocols::jd2::parser::FragmentReader , protocols::toolbox::pose_metric_calculators::FragQualCalculator , protocols::abinitio::DomainAssembly , protocols::forge::remodel::RemodelLoopMover
• FragSetOPs : protocols::forge::remodel::RemodelLoopMover
• FragXYZ : core::kinematics::AtomTree , core::conformation::Conformation
• Frame : protocols::nonlocal::SingleFragmentMover
• FrameList : protocols::forge::components::VarLengthBuild
• FrameMap : protocols::nonlocal::SingleFragmentMover , core::fragment::FragmentRmsd , protocols::nonlocal::BiasedFragmentMover , core::fragment::OrderedFragSetIterator_ , core::fragment::OrderedFragSet
• FrameTypes : core::fragment::FragFactory
• FuncFactory : protocols::constraints_additional::SequenceCoupling1BDConstraint , core::scoring::constraints::SequenceProfileConstraint , protocols::constraints_additional::SequenceCouplingConstraint
• FuncTypes : core::scoring::constraints::FuncFactory
• FuzzyTopology : protocols::abinitio::StrandConstraints