- m -

• M : protocols::sic_dock::Rose
• Map : core::scoring::constraints::ResidueConstraints
• Mat : protocols::sic_dock::RigidScore
• MatchHash : protocols::match::MatchOutputTracker
• MatchSet : protocols::match::HitHasher
• Matrix : core::kinematics::RT
• matrix : protocols::evaluation::PCA
• Matrix : core::kinematics::Stub , core::kinematics::tree::Atom , core::scoring::dna::DNA_BasePotential , core::conformation::symmetry::SymmData , core::scoring::symmetry::SymmetricEnergies , core::sequence::DP_Matrix , core::kinematics::Jump , protocols::hotspot_hashing::StubGenerator , protocols::simple_moves::BBGaussianMover
• MC : protocols::sic_dock::Rose
• MCR : protocols::sic_dock::Rose
• MethodWeights : core::scoring::methods::EnergyMethodOptions
• MethylNameTable : protocols::noesy_assign::MethylNameLibrary
• MetricValueBase : protocols::fldsgn::NcontactsCalculator , protocols::toolbox::pose_metric_calculators::FragQualCalculator
• MetricValueGetterMap : protocols::multistate_design::MultiStateFitnessFunction
• MetricValueMap : protocols::multistate_design::SingleStateEntityData
• MinimizerOptionsCOP : protocols::simple_moves::MinMover
• MinimizerOptionsOP : protocols::simple_moves::MinMover
• MMAtomTypeSets : core::chemical::ChemicalManager
• MMLJScoreTable : core::scoring::mm::MMLJEnergyTable
• Model : protocols::abinitio::PairingStatEntry , protocols::abinitio::PairingStatistics
• ModelFreq : protocols::abinitio::PairingStatistics
• ModelList : protocols::abinitio::PairingStatEntry
• ModelWeight : protocols::abinitio::PairingStatistics
• Modified2Original : protocols::forge::build::BuildManager
• MonteCarlo : protocols::forge::remodel::RemodelLoopMover
• MoveMap : core::fragment::IndependentBBTorsionSRFD , protocols::fldsgn::CircularPermutation , protocols::forge::build::Bridge , protocols::forge::build::BuildInstruction , protocols::forge::build::BuildManager , protocols::forge::build::ConnectRight , protocols::forge::build::GrowLeft , protocols::forge::build::GrowRight , protocols::forge::build::RelativeConnectRight , protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild , protocols::forge::build::SegmentSwap , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelLoopMover
• MoveMapOP : protocols::fldsgn::CircularPermutation , protocols::flxbb::FlxbbDesign , protocols::forge::build::BuildManager , protocols::jd2::parser::BluePrint , protocols::loops::loop_mover::LoopMover , protocols::nonlocal::Chunk , protocols::nonlocal::SingleFragmentMover
• MoveMapTorsionID : core::kinematics::MoveMap
• MoveMapTorsionID_Map : core::kinematics::MoveMap
• Mover : protocols::nonlocal::SingleFragmentMover , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::jd2::Parser
• mover_filter_pair : protocols::rosetta_scripts::ParsedProtocol
• MoverFactory : protocols::jd2::DockDesignParser
• MoverFactoryOP : protocols::jd2::DockDesignParser
• MoverFilterVector : protocols::rosetta_scripts::ParsedProtocol
• MoverMap : protocols::moves::MoverFactory
• MoverOP : protocols::fldsgn::potentials::SetSecStructEnergies , protocols::nonlocal::SingleFragmentMover , protocols::fldsgn::CircularPermutation , protocols::fldsgn::BluePrintBDR , protocols::fldsgn::MatchResidues , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::flxbb::DesignTask , protocols::flxbb::FlxbbDesign , protocols::flxbb::InterlockAroma , protocols::simple_moves::RotamerTrialsMover , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelMover , protocols::jd2::Parser , protocols::match::MatcherMover , protocols::simple_moves::GenericMonteCarloMover , protocols::simple_moves::MonteCarloTest , protocols::moves::FilterMover , protocols::simple_moves::ConsensusDesignMover , protocols::simple_moves::MakePolyXMover , protocols::simple_moves::MonteCarloRecover , protocols::moves::DsspMover , protocols::forge::remodel::RemodelLoopMover , protocols::forge::components::BDR
• MoverRealPair : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
• Movers : protocols::moves::CyclicMover
• Movers_map : protocols::fldsgn::filters::SecondaryStructureFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::CircularPermutation , protocols::fldsgn::BluePrintBDR , protocols::match::MatcherMover , protocols::fldsgn::filters::HelixPairingFilter , protocols::toolbox::pose_metric_calculators::FragQualCalculator , protocols::simple_moves::MonteCarloRecover , protocols::fldsgn::filters::FragQualFilter , protocols::simple_filters::PackStatFilter , protocols::fldsgn::filters::HSSTripletFilter , protocols::simple_moves::MonteCarloTest , protocols::simple_moves::MakePolyXMover , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign , protocols::forge::remodel::RemodelMover , protocols::simple_filters::HolesFilter , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::flxbb::InterlockAroma , protocols::moves::DsspMover , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::MatchResidues , protocols::simple_moves::GenericMonteCarloMover , protocols::forge::remodel::RemodelLoopMover , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::filters::HelixKinkFilter
• Multivec : protocols::optimize_weights::WrapperOptEMultifunc , protocols::optimize_weights::OptEMultifunc , core::pack::scmin::CartSCMinMultifunc , core::pack::scmin::SCMinMultifunc , protocols::optimize_weights::OptEData , protocols::optimize_weights::OptEPositionData