- t -

• t_predicate_func : protocols::flexpep_docking::FlexPepDockingPoseMetrics
• Tag : core::pack::task::operation::ResFilterFactory , core::pack::task::operation::TaskOperationFactory , protocols::protein_interface_design::DockDesignFilterFactory , protocols::qsar::scoring_grid::GridFactory , protocols::filters::FilterFactory , core::pack::task::operation::ResLvlTaskOperationFactory , protocols::jd2::parser::FragmentReader , protocols::moves::MoverFactory
• TagList : protocols::toolbox::KClusterData
• TagPtr : core::pack::task::operation::TaskOperation , protocols::fldsgn::filters::SheetTopologyFilter , protocols::fldsgn::MatchResidues , core::pack::task::operation::TaskOperationFactory , protocols::fldsgn::MatchResiduesMover , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::dna::DnaInterfaceMinMover , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign , protocols::dna::DnaInterfacePacker , protocols::flxbb::InterlockAroma , protocols::flxbb::LayerDesignOperation , protocols::filters::FilterFactory , protocols::forge::remodel::RemodelLoopMover , protocols::forge::remodel::RemodelMover , protocols::fldsgn::BluePrintBDR , protocols::jd2::parser::FragmentReader , protocols::match::MatcherMover , core::pack::task::operation::OperateOnCertainResidues , protocols::fldsgn::CircularPermutation , protocols::moves::DsspMover , protocols::moves::Mover , protocols::fldsgn::filters::CoreDunbrackFilter , protocols::moves::MoverFactory , protocols::protein_interface_design::DockDesignFilterFactory , core::pack::task::operation::ResFilter , protocols::fldsgn::filters::FragQualFilter , protocols::qsar::scoring_grid::GridFactory , protocols::simple_filters::HolesFilter , protocols::fldsgn::filters::HelixKinkFilter , protocols::simple_filters::PackStatFilter , protocols::simple_filters::RangeFilter , core::pack::task::operation::ResFilterFactory , protocols::fldsgn::filters::HelixPairingFilter , protocols::simple_filters::ShapeComplementarityFilter , protocols::simple_moves::GenericMonteCarloMover , protocols::fldsgn::filters::HSSTripletFilter , protocols::simple_moves::MakePolyXMover , protocols::simple_moves::MonteCarloRecover , core::pack::task::operation::ResLvlTaskOperation , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::simple_moves::MonteCarloTest , protocols::toolbox::pose_metric_calculators::FragQualCalculator , protocols::fldsgn::filters::NcontactsFilter , protocols::toolbox::task_operations::JointSequenceOperation , protocols::toolbox::task_operations::LayerOperations , core::pack::task::operation::ResLvlTaskOperationFactory , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter , protocols::toolbox::task_operations::LimitAromaChi2Operation , protocols::toolbox::task_operations::RestrictNativeResiduesOperation , protocols::fldsgn::filters::SecondaryStructureFilter , protocols::toolbox::task_operations::SeqprofConsensusOperation
• Tags : protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD
• TargetValues : protocols::noesy_assign::PeakCalibrator
• TaskFactory : protocols::simple_moves::GreenPacker
• TaskFactoryCOP : protocols::simple_moves::AddConstraintsToCurrentConformationMover , protocols::simple_moves::MinPackMover , protocols::simple_moves::PackRotamersMover , protocols::simple_moves::RotamerTrialsMinMover , protocols::simple_moves::RotamerTrialsMover
• TaskFactoryOP : protocols::enzdes::PackRotamersMoverPartGreedy , protocols::forge::components::BDR , protocols::forge::remodel::RemodelMover , protocols::simple_moves::GenericMonteCarloMover , protocols::simple_moves::GreenPacker
• TaskLayer : protocols::flxbb::LayerDesignOperation
• TaskLayers : protocols::flxbb::LayerDesignOperation
• TaskOperation : protocols::toolbox::task_operations::LimitAromaChi2Operation , protocols::toolbox::task_operations::DockingNoRepack2 , core::pack::task::operation::ReplicateTask , core::pack::task::operation::DockingNoRepack1 , protocols::forge::remodel::RemodelRotamerLinks , core::pack::task::operation::DockingNoRepack2 , core::pack::task::operation::RestrictToInterface , core::pack::task::TaskFactory , protocols::dna::RestrictDesignToProteinDNAInterface , protocols::dna::WatsonCrickRotamerCouplings , protocols::flxbb::FlxbbDesign , protocols::flxbb::LayerDesignOperation , protocols::toolbox::task_operations::InterfaceTaskOperation , protocols::toolbox::task_operations::JointSequenceOperation , protocols::toolbox::task_operations::LayerOperations , protocols::toolbox::task_operations::RestrictNativeResiduesOperation , protocols::toolbox::task_operations::RestrictOperationsBase , protocols::toolbox::task_operations::DockingNoRepack1 , protocols::toolbox::task_operations::RestrictToInterface , protocols::toolbox::task_operations::SeqprofConsensusOperation
• TaskOperationCOP : core::pack::task::TaskFactory
• TaskOperationCreatorMap : core::pack::task::operation::TaskOperationFactory
• TaskOperationOP : core::pack::task::operation::DockingNoRepack2 , protocols::toolbox::task_operations::DockingNoRepack2 , protocols::toolbox::task_operations::RestrictToInterface , protocols::toolbox::task_operations::SeqprofConsensusOperation , core::pack::task::operation::ReplicateTask , protocols::toolbox::task_operations::JointSequenceOperation , protocols::enzdes::SetCatalyticResPackBehavior , protocols::enzdes::DetectProteinLigandInterface , protocols::enzdes::AddRigidBodyLigandConfs , core::pack::task::operation::RestrictToInterface , protocols::flxbb::LayerDesignOperation , protocols::flxbb::CombinedTaskOperation , protocols::toolbox::task_operations::InterfaceTaskOperation , protocols::enzdes::ProteinLigandInterfaceUpweighter , protocols::toolbox::task_operations::RestrictNativeResiduesOperation , protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperation , protocols::toolbox::task_operations::DockingNoRepack1 , core::pack::task::operation::DockingNoRepack1 , core::pack::task::operation::NoRepackDisulfides , core::pack::task::operation::OptCysHG , core::pack::task::operation::OptH , protocols::toolbox::task_operations::LayerOperations , protocols::toolbox::task_operations::RestrictOperationsBase , protocols::toolbox::task_operations::LimitAromaChi2Operation , core::pack::task::TaskFactory , protocols::flxbb::DesignTask , protocols::forge::remodel::RemodelRotamerLinks , protocols::flxbb::FlxbbDesign , protocols::dna::RestrictDesignToProteinDNAInterface , protocols::enzdes::AddLigandMotifRotamers , protocols::dna::WatsonCrickRotamerCouplings
• TaskOperationOPs : core::pack::task::operation::TaskOperationFactory
• TaskOperationSP : core::pack::task::TaskFactory
• TCacheUnit : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitAP : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitOP : core::fragment::CacheWrapper< T, XCacheUnit >
• TemplateList : protocols::abinitio::Templates
• TemplateMap : protocols::abinitio::Templates
• TemplatePoseMap : protocols::antibody2::Ab_TemplateInfo
• Temps : core::io::pdb::FileData
• Tensor : core::scoring::ResidualDipolarCoupling
• Tensor5 : core::scoring::ResidualDipolarCoupling
• TimeStampedChannel : protocols::jd2::MpiFileBuffer
• TMap : core::fragment::MapCacheUnit< T >
• Tokens : core::coarse::Rule
• Topologies : protocols::abinitio::PairingStatistics
• TopologyClaimerCAPs : protocols::topology_broker::ClaimerMessage
• TopologyClaimers : protocols::topology_broker::TopologyBroker
• torsion_parameter : core::scoring::methods::ResidueCartBondedParameters
• TorsionID : core::optimization::DOF_Node , core::pose::Pose , core::conformation::symmetry::SymmetryInfo , core::kinematics::MoveMap , core::conformation::Conformation
• TorsionID_Map : core::kinematics::MoveMap
• TorsionIDs : core::conformation::symmetry::SymmetryInfo
• TorsionType : core::kinematics::MoveMap
• TorsionTypeMap : core::kinematics::MoveMap
• TraitEntityHashMap : protocols::genetic_algorithm::GeneticAlgorithm
• TranslatorMap : core::coarse::TranslatorSet
• TVector : core::fragment::VectorCacheUnit< T >
• TWO_B_MethodIterator : core::scoring::ScoreFunction
• TWO_B_Methods : core::scoring::ScoreFunction
• TwoBodyEnergies : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TwoBodyEnergiesIterator : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TypeCumulator : protocols::noesy_assign::PeakCalibrator