- f -

• f00_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• f11_ : core::optimization::DOF_DataPoint , core::optimization::DerivCheckDataPoint
• f1_ : core::scoring::DerivVectorPair
• F1_ : core::optimization::DOF_Node
• f1ij_ : core::scoring::DC , core::scoring::CSA
• F2 : core::scoring::electron_density::ElectronDensity
• f22_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• f2_ : core::scoring::DerivVectorPair
• F2_ : core::optimization::DOF_Node
• f2c : core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• f2ij_ : core::scoring::CSA , core::scoring::DC
• f3ij_ : core::scoring::CSA
• F_s2 : core::scoring::electron_density::ElectronDensity
• FA_ : core::scoring::ResidualDipolarCoupling
• fa_attr : protocols::features::helixAssembly::FragmentPair
• fa_center_ : core::scoring::Membrane_FAEmbed
• fa_cfg_file_ : core::scoring::saxs::SAXSEnergy
• fa_constraints_ : protocols::constraints_additional::ConstraintEvaluator , protocols::topology_broker::ConstraintClaimer
• fa_cst_fn_ : protocols::hybridization::HybridizeProtocol
• fa_depth_ : core::scoring::Membrane_FAEmbed
• fa_disulfide_potential_ : core::scoring::ScoringManager
• fa_dock_slide_into_contact_ : protocols::docking::DockingPrepackProtocol
• fa_dun_cutoff_ : protocols::match::upstream::BuildSet
• fa_dun_danger_ : protocols::fldsgn::filters::CoreDunbrackFilter
• fa_dun_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_rot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_tot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_filename_ : protocols::topology_broker::ConstraintClaimer
• fa_fraction : protocols::features::helixAssembly::FragmentPair
• fa_mbenv_weight_ : core::scoring::methods::Fa_MbenvEnergy
• fa_mbsolv_weight_ : core::scoring::methods::Fa_MbsolvEnergy
• Fa_Membed_update_ : core::scoring::Membrane_FAEmbed
• fa_penalty_ : core::scoring::Membrane_FAEmbed
• fa_pose_ : protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure
• fa_proj_ : core::scoring::Membrane_FAEmbed
• fa_proj_coord_ : core::scoring::Membrane_FAEmbed
• fa_proj_deriv_ : core::scoring::Membrane_FAEmbed
• fa_rep_cutoff_ : protocols::swa::RigidBodySampler
• fa_score_ : protocols::abinitio::IterativeBase
• fa_score_patch_ : protocols::abinitio::IterativeBase
• fa_scorefxn_ : protocols::antibody::CDRH3Modeler , protocols::comparative_modeling::LoopRelaxMover , protocols::grafting::GraftMoverBase , protocols::hybridization::HybridizeProtocol , protocols::rbsegment_relax::AutoRBMover , protocols::relax::CentroidRelax , protocols::seeded_abinitio::CloseFold , protocols::swa::protein::StepWiseProteinPoseMinimizer
• facet_alpha_ : protocols::match::Bool3DGridKinemageWriter
• facet_color_ : protocols::match::Bool3DGridKinemageWriter
• facet_master_ : protocols::match::Bool3DGridKinemageWriter
• factor_ : core::scoring::dna::TorsionFourierComponent , core::scoring::saxs::DistanceHistogram
• factorA_ : protocols::simple_moves::BBConRotMover , protocols::simple_moves::BBG8T3AMover
• factorB_ : protocols::simple_moves::BBConRotMover , protocols::simple_moves::BBG8T3AMover
• factorC_ : protocols::simple_moves::BBConRotMover
• factors_ : protocols::scoring::methods::saxs::PDDFEnergy
• factory_ : protocols::flexpack::FlexPacker , protocols::frag_picker::scores::AtomPairConstraintsScore , protocols::frag_picker::scores::DihedralConstraintsScore , protocols::frag_picker::scores::InterbondAngleScore , protocols::simple_moves::GenericMonteCarloMover , protocols::simple_moves::RotamerTrialsMinMover , protocols::simple_moves::RotamerTrialsMover , protocols::simple_moves::TaskAwareMinMover
• fadd : core::scoring::APBSConfig
• fade_ : core::scoring::rna::RNA_LowResolutionPotential
• fade_alpha_ap_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_minus_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_plus_ : core::scoring::rna::RNA_TorsionPotential
• fade_delta_north_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_delta_south_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_zone_ : core::scoring::constraints::FadeFunc
• fafilter_ : protocols::loophash::LoopHashMoverWrapper
• fail_on_constraints_missing_ : protocols::enzdes::AddOrRemoveMatchCsts
• fake_working_moving_suite : protocols::swa::rna::InternalWorkingResidueParameter
• fallback_resource_descriptions_created_ : protocols::jd2::JD2ResourceManager
• false_movemap_ : protocols::forge::remodel::RemodelLoopMover , protocols::loops::loop_mover::LoopMover
• false_mover_ : protocols::moves::IfMover
• farray_coord_ptr_ : protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
• fasol_final_weight : core::scoring::etable::EtableParamsOnePair
• fasol_spline_close : core::scoring::etable::EtableParamsOnePair
• fasol_spline_close_end : core::scoring::etable::EtableParamsOnePair
• fasol_spline_close_start : core::scoring::etable::EtableParamsOnePair
• fasol_spline_far : core::scoring::etable::EtableParamsOnePair
• fasol_spline_far_diff_xhi_xlo : core::scoring::etable::Etable
• fasol_spline_far_diff_xhi_xlo_inv : core::scoring::etable::Etable
• fasol_spline_far_xhi : core::scoring::etable::Etable
• fasol_spline_far_xlo : core::scoring::etable::Etable
• fast_ : protocols::idealize::IdealizeMover , protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler , protocols::swa::rna::StepWiseRNA_ResidueSampler , protocols::swa::rna::StepWiseRNA_RotamerGenerator , protocols::swa::rna::StepWiseRNA_RotamerGenerator_Wrapper
• fast_build_ : protocols::forge::remodel::RemodelMover::instruction_flags
• fast_calc_ : protocols::simple_filters::RotamerBoltzmannWeight
• fast_full_atom_VDW_replusion_screen : protocols::swa::rna::SillyCountStruct
• fast_scan_ : protocols::rna::RNA_LoopCloser
• fasta2template_ : protocols::comparative_modeling::ThreadingJob
• fastdens_dscoredx : core::scoring::electron_density::ElectronDensity
• fastdens_dscoredy : core::scoring::electron_density::ElectronDensity
• fastdens_dscoredz : core::scoring::electron_density::ElectronDensity
• fastdens_score : core::scoring::electron_density::ElectronDensity
• fastgrid : core::scoring::electron_density::ElectronDensity
• fastorigin : core::scoring::electron_density::ElectronDensity
• fastrelax_ : protocols::loophash::LoopHashMoverWrapper
• favor_native_bonus_ : core::scoring::constraints::ResidueTypeConstraint
• favor_native_constraints_ : protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver
• favor_non_native_bonus_ : core::scoring::constraints::NonResidueTypeConstraint
• favorable_energies : protocols::vip::VIP_Mover
• favorable_mutations : protocols::vip::VIP_Mover
• favorable_positions : protocols::vip::VIP_Mover
• favorable_residues : protocols::vip::VIP_Mover
• favored_rotamer_numbers_ : core::pack::dunbrack::RotamerConstraint
• favored_rotamers_ : core::pack::dunbrack::RotamerConstraint
• fc_bg_ : core::pack::interaction_graph::exposed_hydrophobic_data
• fc_exp_hphobe_djs_offsets_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_n_exp_hphobes_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_neighbor_map : core::pack::interaction_graph::SurfaceNode< V, E, G >
• fc_node_alt_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_node_curr_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_nodes_near_rotsub_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_nodes_near_rotsub_bool_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fcen10_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen12_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen6_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcenter : core::scoring::APBSConfig
• fd_ : core::import_pose::PDBSilentStruct
• Fdensity : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dx : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dy : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dz : core::scoring::electron_density::ElectronDensity
• feature_types_ : protocols::comparative_modeling::features::ResidueFeatureFactory
• features_reporter_factory_ : protocols::features::ReportToDB
• features_reporters_ : protocols::features::ReportToDB
• fetch_foldtree : protocols::seeded_abinitio::GrowPeptides
• ff_manager_ : core::scoring::saxs::SAXSEnergy , protocols::scoring::methods::saxs::PDDFEnergy
• ff_map_ : core::scoring::saxs::FormFactorManager , core::scoring::saxs::SAXSEnergy
• ff_ops_ : core::scoring::saxs::SAXSEnergy
• ff_values_ : core::scoring::saxs::FormFactor
• ff_vector_ : core::scoring::saxs::FormFactorManager
• fglen : core::scoring::APBSConfig
• fi_ : protocols::frag_picker::DiversifyCrmsdSelector
• field_ : protocols::wum::sort_SilentStructOPs , protocols::wum::find_SilentStructOPs
• fij_ : core::scoring::RDC
• file_ : protocols::canonical_sampling::PatchOperation , protocols::canonical_sampling::TrialCounterObserver
• file_2_data_map_ : protocols::scoring::methods::pcs::PCS_data_input_manager
• file_buf_rank_ : protocols::jd2::archive::ArchiveManager , protocols::jd2::MPIFileBufJobDistributor
• file_buffer : protocols::checkpoint::CheckPointer
• file_contents_ : protocols::pack_daemon::DynamicAggregateFunction
• file_name_ : protocols::canonical_sampling::MetricRecorder , protocols::canonical_sampling::TrajectoryRecorder , protocols::constraints_additional::ConstraintEvaluator
• file_name_prefix_ : protocols::protein_interface_design::movers::MapHotspot
• file_names_ : protocols::inputter::FastaInputter , protocols::inputter::PDBInputter , protocols::simple_filters::FileRemoveFilter
• file_node_2_instance_node_ : core::pack::interaction_graph::PDInteractionGraph
• file_out_ : protocols::match::output::WriteUpstreamCoordinateKinemage , protocols::match::output::WriteUpstreamHitKinemage
• file_read_ : core::import_pose::atom_tree_diffs::AtomTreeDiff , protocols::toolbox::match_enzdes_util::EnzdesLoopsFile
• file_reading_token_ : protocols::loops::Loops
• file_to_read_ : protocols::ddG::ddGData
• file_vector_ : core::chemical::sdf::SDFParser
• filename : core::io::pdb::FileData
• filename_ : core::io::raw_data::DecoyFileData , core::io::raw_data::DisulfideFile , core::io::raw_data::ScoreFileData , core::io::silent::SilentFileData , core::scoring::constraints::SplineFunc , protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel , protocols::checkpoint::FileBuffer , protocols::forge::constraints::ConstraintFileRCG , protocols::jd2::parser::FragmentReader , protocols::jd2::SingleFileBuffer , protocols::loophash::EXCN_DB_IO_Failed , protocols::loophash::EXCN_Wrong_DB_Format , protocols::noesy_assign::CrossPeakInfo , protocols::noesy_assign::PeakFileFormat_Base , protocols::qsar::RenderGridsToKinemage , protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcs::PCS_file_data , protocols::scoring::methods::pcs2::PcsDataLanthanide , protocols::scoring::methods::pcs2::PcsInputFile , protocols::simple_filters::FileExistFilter , protocols::simple_moves::LoadPDBMover , protocols::topology_broker::ConstraintClaimer , protocols::topology_broker::CoordConstraintClaimer
• filename_root_ : protocols::dna::DnaInterfacePacker , protocols::motifs::MotifDnaPacker
• filenameparts_ : protocols::outputter::FormatStringOutputter
• filenames_ : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::PDBPoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream , protocols::scoring::methods::pcs2::PcsGridSearchParameter , protocols::topology_broker::PseudocontactShiftEnergyController
• files_for_state_ : protocols::pack_daemon::DynamicAggregateFunction
• filled_substitution_history_ : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
• filter_ : core::pack::task::operation::OperateOnCertainResidues , protocols::cluster::GatherPosesMover , protocols::docking::DockMCMProtocol , protocols::flxbb::FlxbbDesignPack , protocols::hotspot_hashing::HotspotStub , protocols::hotspot_hashing::HotspotStubSet , protocols::moves::IfMover , protocols::moves::IteratedConvergenceMover , protocols::protein_interface_design::filters::FilterScanFilter , protocols::protein_interface_design::movers::SetTemperatureFactor , protocols::seeded_abinitio::PlaceFragments , protocols::simple_filters::DeltaFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::RelativePoseFilter , protocols::simple_filters::ReportFilter , protocols::simple_filters::Sigmoid
• filter_beta : protocols::loophash::FilterBucket
• filter_by_lj_ : protocols::match::output::MatchCollisionFilter
• filter_by_phipsi_ : protocols::loophash::LoopHashDiversifier , protocols::loophash::LoopHashMoverWrapper , protocols::loophash::LoopHashSampler
• filter_chain_closure_ : protocols::rna::RNA_DeNovoProtocol
• filter_chain_closure_distance_ : protocols::rna::RNA_DeNovoProtocol
• filter_chain_closure_halfway_ : protocols::rna::RNA_DeNovoProtocol
• filter_creator_map_ : core::pack::task::operation::ResFilterFactory , protocols::filters::FilterFactory
• filter_cst_ : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• filter_cst_weight_ : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• filter_deltas_ : protocols::design_opt::GreedyOptMutationMover , protocols::design_opt::ParetoOptMutationMover
• filter_during_design_ : protocols::flxbb::FlxbbDesign
• filter_failcounts_ : protocols::match::output::MatchProcessor
• filter_for_chain_closable_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_moving_res_contact : protocols::swa::rna::Filterer_Count
• filter_for_moving_res_contact_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_previous_clash : protocols::swa::rna::Filterer_Count
• filter_for_previous_clash_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_previous_contact : protocols::swa::rna::Filterer_Count
• filter_for_previous_contact_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_gly : protocols::loophash::FilterBucket
• filter_lores_base_pairs_ : protocols::rna::RNA_DeNovoProtocol
• filter_lores_base_pairs_early_ : protocols::rna::RNA_DeNovoProtocol
• filter_max_angle_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_max_dist_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_min_angle_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_min_dist_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_mode_ : protocols::protein_interface_design::filters::AtomicContactCountFilter
• filter_name_ : protocols::match::output::MatchFilter , protocols::simple_filters::RelativePoseFilter , protocols::topology_broker::ConstraintClaimer
• filter_names_ : protocols::match::MatcherTask
• filter_native_big_bins_ : protocols::swa::protein::StepWiseProteinScreener , protocols::swa::StepWiseScreener
• filter_on_ : protocols::flxbb::FilterStructs
• filter_pro : protocols::loophash::FilterBucket
• filter_SASA_ : protocols::anchored_design::AnchoredDesignMover
• filter_score_ : protocols::anchored_design::AnchoredDesignMover
• filter_stage2_beginning : protocols::relax::ClassicRelax
• filter_stage2_end : protocols::relax::ClassicRelax
• filter_stage2_half : protocols::relax::ClassicRelax
• filter_stage2_quarter : protocols::relax::ClassicRelax
• filter_structs_ : protocols::flxbb::DesignTask
• filter_templates_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• filter_upstream_and_downstream_collisions_by_score_ : protocols::match::MatcherTask
• filter_upstream_and_downstream_residue_collisions_ : protocols::match::MatcherTask
• filter_upstream_collisions_by_score_ : protocols::match::MatcherTask
• filter_upstream_residue_collisions_ : protocols::match::MatcherTask
• filter_user_alignment_res_ : protocols::swa::rna::StepWiseRNA_JobParameters_Setup
• filter_value_ : protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter
• filter_virtual_res_list_ : protocols::swa::rna::StepWiseRNA_Clusterer
• filter_weight_ : protocols::topology_broker::ConstraintClaimer
• filtered_abego_ : protocols::fldsgn::filters::SecondaryStructureFilter
• filtered_area_ : protocols::simple_filters::ShapeComplementarityFilter
• filtered_base_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_pair_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stagger_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_sc_ : protocols::simple_filters::ShapeComplementarityFilter
• filtered_score_ : protocols::simple_filters::PackStatFilter
• filtered_sheet_topology_ : protocols::fldsgn::filters::SheetTopologyFilter
• filtered_ss_ : protocols::fldsgn::filters::SecondaryStructureFilter
• filtered_type_ : protocols::fldsgn::filters::FragQualFilter
• filtered_value_ : protocols::fldsgn::filters::FragQualFilter , protocols::simple_filters::HolesFilter
• filterer_count_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filterered_combine_tag_info_list_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• filterlist_ : protocols::filters::CombinedFilter
• filters_ : protocols::design_opt::GreedyOptMutationMover , protocols::design_opt::ParetoOptMutationMover , protocols::design_opt::PointMutationCalculator , protocols::docking::DockingLowResFilter , protocols::filters::CalculatorFilter , protocols::filters::FilterCollection , protocols::frag_picker::FragmentPicker , protocols::loops::loop_closure::kinematic_closure::KinematicMover , protocols::match::output::MatchProcessor , protocols::simple_filters::Operator , protocols::simple_moves::GenericMonteCarloMover
• filters_with_state_ : protocols::match::output::MatchProcessor
• final : protocols::jd2::archive::MPIArchiveJobDistributor::CompletionMessage
• final_dist_power_ : protocols::noesy_assign::DistanceScoreMover
• final_energy : protocols::vip::VIP_Mover
• final_filter_ : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::TryRotamers
• final_fold_tree_ : protocols::abinitio::KinematicControl , protocols::topology_broker::TopologyBroker
• final_number_ : protocols::swa::protein::StepWiseProteinFilterer , protocols::swa::StepWiseFilterer
• final_pose : protocols::vip::VIP_Mover
• final_scorefxn_ : protocols::rosetta_scripts::ParsedProtocol
• final_temp : protocols::rbsegment_relax::RBSegmentRelax
• final_test_ : protocols::motifs::MotifHit
• final_weight_ : protocols::abinitio::CoordinateConstraintKC
• final_weight_linear_chainbreak_ : protocols::loops::loop_closure::ccd::LoopClosure
• final_weight_overlap_chainbreak_ : protocols::loops::loop_closure::ccd::LoopClosure
• finalize_MPI_ : protocols::jd2::MPIWorkPoolJobDistributor
• finalized_ : core::chemical::ResidueType , protocols::fldsgn::topology::StrandPairingSet
• finalized_energies_ : core::scoring::Energies
• find_automatically_ : protocols::protein_interface_design::movers::AddChainBreak
• fine_centering_mode : core::scoring::APBSConfig::I_PARAM
• fine_res_type_ : core::coarse::Translator
• fine_rmsd_count : protocols::swa::rna::SillyCountStruct
• finer_sampling_at_chain_closure_ : protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler , protocols::swa::rna::StepWiseRNA_ResidueSampler
• finish_stage_ : protocols::abinitio::IterativeBase
• finished_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• first : core::fragment::FragID
• first_ : protocols::match::Hit , protocols::match::upstream_hit
• first_apply_with_current_setup_ : protocols::docking::DockingLowRes , protocols::docking::DockingProtocol , protocols::docking::TemperedDocking
• first_atom_ : protocols::frag_picker::scores::AtomPairConstraintsData , protocols::frag_picker::scores::FourAtomsConstraintData
• first_atom_in_branch_ : core::scoring::trie::TrieNode< AT, CPDATA >
• first_batch_this_stage_ : protocols::abinitio::IterativeBase
• first_chain_break_res_ : protocols::swa::StepWiseJobParameters
• first_class_node_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_class_node_index_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_fullatom_batch_ : protocols::abinitio::IterativeBase
• first_generator_ : protocols::swa::StepWiseCombineSampleGenerator
• first_mover_ : protocols::moves::JumpOutMover
• first_nbr_ : core::optimization::ParticleSwarmMinimizer
• first_node_num_states_per_aatype_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• first_noesy_cst_file_ : protocols::abinitio::IterativeBase
• first_noesy_fa_cst_file_ : protocols::abinitio::IterativeBase
• first_pass_ : protocols::protein_interface_design::movers::Splice
• first_pose_ : protocols::swa::rna::StepWiseRNA_Clusterer
• first_residue_index_ : protocols::frag_picker::CSTalosIO , protocols::frag_picker::PhiPsiTalosIO
• first_sidechain_hydrogen_ : core::chemical::ResidueType
• first_time_prepping_for_simA_ : core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• first_time_writing_ : protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel , protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
• first_upper_edge_ : core::graph::Node
• firstRes : protocols::sparta::Sparta::SpartaLib
• firstResID : protocols::sparta::GDB
• FIT_Tab : protocols::sparta::Sparta::SpartaLib
• fitFileName : protocols::sparta::Sparta::SpartaLib
• fitness_ : core::optimization::Particle , protocols::genetic_algorithm::Entity , protocols::multistate_design::SingleStateEntityData
• fitness_exp_ : protocols::pack_daemon::DynamicAggregateFunction
• fitness_function_ : protocols::genetic_algorithm::GeneticAlgorithm , protocols::multistate_design::SingleState
• fitness_pbest_ : core::optimization::Particle
• fitness_threshold_ : protocols::protein_interface_design::filters::BoltzmannFilter
• fitness_valid_ : protocols::genetic_algorithm::Entity
• Fitting : protocols::sparta::Sparta::SpartaLib
• five_membered_ring_conformers_ : protocols::simple_moves::carbohydrates::RingConformationMover
• five_prime_atom : protocols::swa::rna::Jump_point
• five_prime_chain_break : protocols::swa::rna::FloatingBaseChainClosureJobParameter
• five_prime_chain_break_res_ : protocols::swa::rna::StepWiseRNA_JobParameters
• five_prime_seq_num : protocols::swa::rna::Jump_point
• fix_catalytic_ : protocols::enzdes::EnzRepackMinimize
• fix_catalytic_aa_ : protocols::enzdes::SetCatalyticResPackBehavior , protocols::enzdes::EnzdesBaseProtocol
• fix_his_tautomer_ : core::pack::task::ResidueLevelTask_
• fix_ligands_ : protocols::rbsegment_relax::RBSegmentRelax
• fix_natsc_ : protocols::loops::loop_mover::refine::LoopMover_Refine_KIC
• fix_reference_energies_ : protocols::optimize_weights::OptEMultifunc
• fixed_ : core::scoring::OneToAllEnergyContainer
• fixed_atom_ : core::scoring::constraints::CoordinateConstraint
• fixed_atom_id_ : core::scoring::constraints::BackboneStubConstraint
• fixed_chains_ : protocols::analysis::InterfaceAnalyzerMover
• fixed_count_ : protocols::optimize_weights::IterativeOptEDriver
• fixed_data_ : protocols::optimize_weights::PNatAAOptERotamerData , protocols::optimize_weights::PNatRotOptERotamerData , protocols::optimize_weights::SingleStructureData
• fixed_energies_ : core::scoring::MinimizationGraph
• fixed_energy_terms_ : protocols::optimize_weights::OptEData
• fixed_parameters_ : protocols::optimize_weights::IterativeOptEDriver
• fixed_reference_point_ : core::scoring::constraints::BackboneStubConstraint
• fixed_res_ : protocols::swa::rna::StepWiseRNA_Minimizer , protocols::swa::protein::StepWiseProteinPoseMinimizer , protocols::swa::RigidBodySampler , protocols::swa::rna::StepWiseRNA_JobParameters_Setup , protocols::swa::StepWisePoseSetup
• fixed_residue_ : core::scoring::methods::PoissonBoltzmannEnergy
• fixed_residues_ : protocols::swa::rna::StepWiseRNA_BaseCentroidScreener
• fixed_score_list_ : protocols::optimize_weights::IterativeOptEDriver , protocols::optimize_weights::OptEMultifunc , protocols::optimize_weights::WrapperOptEMultifunc
• fixed_score_names_ : protocols::optimize_weights::WrapperOptEMultifunc
• fixed_scores_ : protocols::optimize_weights::WrapperOptEMultifunc
• fixed_stub_ : core::scoring::constraints::LocalCoordinateConstraint
• fixed_terms_ : protocols::optimize_weights::OptEMultifunc
• fixResidue_ : protocols::jumping::ResiduePairJumpSingle
• fj_ : protocols::frag_picker::DiversifyCrmsdSelector
• flag_for_calculation_ : core::scoring::FACTSResidueInfo
• flags_ : protocols::flexpep_docking::FlexPepDockingPoseMetrics , protocols::flexpep_docking::FlexPepDockingAbInitio , protocols::flexpep_docking::FlexPepDockingLowRes , protocols::flexpep_docking::FlexPepDockingProtocol
• flags_and_objects_are_in_sync_ : protocols::docking::DockingProtocol , protocols::antibody2::AntibodyModelerProtocol , protocols::docking::DockingLowRes , protocols::docking::TemperedDocking
• flank_cdrh3_map_ : protocols::antibody2::H3RefineCCD
• flank_relax_ : protocols::antibody::CDRH3Modeler , protocols::antibody2::H3RefineCCD , protocols::antibody2::RefineOneCDRLoop
• flank_residue_min_ : protocols::loops::loop_mover::refine::LoopMover_Refine_KIC , protocols::antibody2::AntibodyModelerProtocol , protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
• flank_residue_size_ : protocols::antibody2::AntibodyModelerProtocol
• flank_size_ : protocols::antibody2::RefineOneCDRLoop , protocols::antibody2::GraftOneCDRLoop , protocols::antibody2::H3RefineCCD
• flanking_residues_ : protocols::antibody::CloseOneMover , protocols::antibody2::CloseOneCDRLoop
• flex_cter_ : protocols::ub_e2c::ubi_e2c_modeler
• flex_cter_map_ : protocols::ub_e2c::ubi_e2c_modeler
• flex_dna_sugar_ : protocols::motifs::MotifDnaPacker
• flex_regions_ : protocols::enzdes::EnzdesFlexBBProtocol
• flexseg_bb_offset_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_considering_alt_bb_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_for_bb_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_for_moltenres_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_members_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexsegment_span_ : protocols::flexpack::rotamer_set::FlexbbRotamerSets
• flip_HNQ_ : core::pack::task::operation::OptH , core::pack::task::ResidueLevelTask_
• flip_sign_ : protocols::simple_moves::GenericMonteCarloMover
• floating_acceptance_ratio_ : protocols::jd2::archive::ArchiveBase
• floating_base_ : protocols::swa::rna::StepWiseRNA_ResidueSampler
• floating_pairs_ : protocols::hybridization::FoldTreeHybridize
• floor_ : protocols::filters::IfThenFilter
• fmax_ : core::scoring::constraints::MixtureFunc , core::scoring::hbonds::FadeInterval
• fmin_ : core::scoring::hbonds::FadeInterval
• fn_ : core::scoring::methods::CustomAtomPairEnergy
• fname_ : protocols::loops::ResidueIndexDescriptionFromFile , protocols::simple_moves::DumpPdb
• fname_prefix_ : protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• focused_bg_edge_ : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
• focused_edge_ : core::graph::Graph , core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_ : core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_end_ : core::pack::interaction_graph::InteractionGraphBase
• focused_geomcst_id_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• focused_iterative_vector_expression_ : protocols::pack_daemon::DynamicAggregateFunction
• focused_node_ : core::scoring::constraints::CstResNeighbIterator , core::scoring::constraints::CstResNeighbConstIterator
• focused_residue_ : core::pack::scmin::SCMinMinimizerMap , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfResNeighbIterator , core::scoring::disulfides::DisulfResNeighbConstIterator
• fold_label_resonance_ : protocols::noesy_assign::CrossPeakInfo
• fold_proton_resonance_ : protocols::noesy_assign::CrossPeakInfo
• fold_tree_ : protocols::jumping::JumpSample , protocols::moves::ChangeFoldTreeMover , protocols::seeded_abinitio::SeedFoldTree , protocols::swa::rna::StepWiseRNA_JobParameters , protocols::topology_broker::TopologyBroker , core::io::silent::ProteinSilentStruct_Template< T > , protocols::docking::TemperedDocking , core::conformation::Conformation , core::io::silent::BinaryProteinSilentStruct , core::io::silent::BinaryRNASilentStruct , core::io::silent::RNA_SilentStruct , core::pose::MiniPose , protocols::docking::DockingProtocol
• fold_tree_io_ : core::import_pose::ImportPoseOptions
• folding_verteces_ : protocols::seeded_abinitio::SeedFoldTree
• foldtree_ : protocols::floppy_tail::FloppyTailMover
• foldtree_mover_ : protocols::hybridization::FoldTreeHybridize
• foldtype2name_ : protocols::fldsgn::topology::SheetFoldTypeManager
• foldtype2spairs_ : protocols::fldsgn::topology::SheetFoldTypeManager
• follows : core::kinematics::Node
• forbidden_names_ : protocols::moves::MoverFactory
• force : protocols::cartesian::CartesianAtom , protocols::ligand_docking::Translate_info
• force_align_ : protocols::swa::StepWiseClusterer , protocols::swa::PoseFilter_RMSD_Screen
• force_apix_ : core::scoring::electron_density::ElectronDensity
• force_bb_ : core::chemical::ResidueType
• force_const_ : protocols::toolbox::match_enzdes_util::GeomSampleInfo
• force_ideal_chainbreak_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol , protocols::toolbox::AllowInsert
• force_nbr_atom_orient_ : core::chemical::SetOrientAtom , core::chemical::ResidueType
• force_nonideal_ : protocols::relax::FastRelax
• force_north_ribose_list_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::rna::StepWiseRNA_RotamerGenerator_Wrapper
• force_south_ribose_list_ : protocols::swa::rna::StepWiseRNA_RotamerGenerator_Wrapper , protocols::swa::rna::StepWiseRNA_JobParameters
• force_syn_chi_res_list_ : protocols::swa::rna::StepWiseRNA_RotamerGenerator , protocols::swa::rna::StepWiseRNA_RotamerGenerator_Wrapper , protocols::swa::rna::StepWiseRNA_JobParameters
• forced_pos_ : protocols::simple_filters::SymmetricMotifFilter
• forget_chains_and_interface_ : protocols::dna::RestrictDesignToProteinDNAInterface
• FORMAT : protocols::sparta::GDB
• format_ : core::fragment::picking_old::vall::VallResidue
• FORMAT_str : protocols::sparta::GDB
• format_string_ : protocols::outputter::FormatStringOutputter
• forward_deviation_ : protocols::loops::loop_closure::ccd::CcdLoopClosureMover
• forward_jump_ : protocols::motifs::Motif
• forward_res_ : protocols::coarse_rna::CoarseRNA_LoopCloser
• forward_threshold_ : protocols::simple_moves::WobbleMover
• found_res_compatibility_ : protocols::enzdes::SecondaryMatchProtocol
• found_res_compatibility_determined_ : protocols::enzdes::SecondaryMatchProtocol
• found_resis_ : protocols::enzdes::SecondaryMatchProtocol
• fourth_atom_ : protocols::frag_picker::scores::FourAtomsConstraintData
• fourth_offset_ : protocols::frag_picker::scores::FourAtomsConstraintData
• fpdock_metrics_ : protocols::flexpep_docking::FlexPepDockingProtocol
• frac_cav_ball_required_exposed : core::scoring::packstat::SasaOptions
• fraction_by_recombination_ : protocols::genetic_algorithm::GeneticAlgorithm , protocols::dna::DnaInterfaceMultiStateDesign , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• fraction_chain1_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• fraction_chain2_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• fraction_done : protocols::boinc::BoincSharedMemory
• fraction_done_ : protocols::boinc::Boinc
• frag1_ : protocols::forge::components::VarLengthBuild , protocols::protein_interface_design::movers::LoopRemodel
• frag3_ : protocols::anchored_design::AnchorMoversData , protocols::protein_interface_design::movers::LoopRemodel , protocols::forge::components::VarLengthBuild
• frag3_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag5_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag9_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::forge::components::VarLengthBuild
• frag9_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag_ : protocols::toolbox::pose_metric_calculators::FragQualCalculator
• frag_1mer_insertion_weight_ : protocols::hybridization::HybridizeProtocol , protocols::hybridization::FoldTreeHybridize
• frag_bias_ : protocols::hybridization::CartesianSampler
• frag_cache_ : protocols::simple_moves::GunnCost , core::fragment::FragmentIO
• frag_designabilities_ : protocols::enzdes::EnzdesFlexibleRegion
• frag_factory_ : core::fragment::FragmentIO
• frag_length_ : protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover
• frag_libs_ : protocols::comparative_modeling::LoopRelaxThreadingMover , protocols::hybridization::WeightedFragmentSmoothTrialMover , protocols::hybridization::WeightedFragmentTrialMover , protocols::loop_build::LoopMover_SlidingWindow , protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD , protocols::comparative_modeling::MultiThreadingMover , protocols::comparative_modeling::ThreadingMover , protocols::rbsegment_relax::AutoRBMover , protocols::LoopRebuild , protocols::rbsegment_relax::RBSegmentRelax , protocols::loops::loop_mover::LoopMover , protocols::domain_assembly::AssembleLinkerMover , protocols::comparative_modeling::LoopRelaxMover
• frag_libs_1mer_ : protocols::hybridization::FoldTreeHybridize
• frag_libs_big_ : protocols::hybridization::FoldTreeHybridize
• frag_libs_small_ : protocols::hybridization::FoldTreeHybridize
• frag_list_ : core::fragment::Frame
• frag_mover_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol , protocols::loops::loop_closure::ccd::LoopClosure
• frag_num : protocols::simple_moves::LoggedFragmentMover::Item
• frag_pos_coordinates_ : protocols::frag_picker::scores::FragmentCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentDME , protocols::frag_picker::scores::FragmentAllAtomCrmsd
• frag_resids_ : protocols::frag_picker::scores::FragmentAllAtomCrmsd
• frag_size_ : protocols::frag_picker::quota::TorsionBinPool , core::fragment::picking_old::vall::gen::LengthGen , protocols::jd2::parser::FragmentReader , protocols::rna::RNA_FragmentMover , protocols::rna::RNA_DeNovoProtocol , protocols::topology_broker::TemplateFragmentClaimer , protocols::coarse_rna::CoarseRNA_DeNovoProtocol , protocols::frag_picker::quota::QuotaCollector
• frag_sizes_ : protocols::frag_picker::FragmentPicker , protocols::frag_picker::scores::GunnCostScore , protocols::frag_picker::nonlocal::NonlocalFrags
• frag_source_file_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_source_pose_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_source_secstruct_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_types_ : core::fragment::FragFactory
• frag_weight_aligned_ : protocols::hybridization::HybridizeProtocol , protocols::hybridization::FoldTreeHybridize
• fragfull_ : protocols::forge::components::VarLengthBuild
• fragment_1 : protocols::features::helixAssembly::FragmentPair
• fragment_2 : protocols::features::helixAssembly::FragmentPair
• fragment_bias_strategy_ : protocols::hybridization::CartesianSampler
• fragment_coordinates_ : protocols::frag_picker::scores::FragmentDME , protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentCrmsd
• fragment_counters_ : protocols::enzdes::EnzdesFlexBBProtocol
• fragment_library_pointer_map : protocols::rna::RNA_Fragments , protocols::rna::FullAtomRNA_Fragments
• fragment_num_ : protocols::nonlocal::SmoothPolicy::Candidate
• fragment_pose_ : protocols::frag_picker::scores::FragmentAllAtomCrmsd
• fragmentLength_ : protocols::frag_picker::FragmentCandidate
• fragments9_ : protocols::hybridization::CartesianHybridize
• fragments_ : protocols::ligand_docking::LigandDesign , core::fragment::FragmentRmsd , protocols::ligand_docking::GrowLigand , protocols::medal::MedalExchangeMover , protocols::nonlocal::Policy , protocols::frags::TorsionFragmentLibrary , protocols::frags::SingleResidueTorsionFragmentLibrary , protocols::hybridization::CartesianSampler , protocols::nonlocal::SingleFragmentMover , protocols::seeded_abinitio::CloseFold , protocols::nonlocal::BiasedFragmentMover , protocols::seeded_abinitio::PlaceFragments
• fragments_big_ : protocols::hybridization::HybridizeProtocol , protocols::seeded_abinitio::SegmentHybridizer
• fragments_lg_ : protocols::medal::MedalMover , protocols::star::StarAbinitio
• fragments_picked_ : protocols::forge::components::VarLengthBuild
• fragments_set_ : protocols::abinitio::DomainAssembly
• fragments_sm_ : protocols::star::StarAbinitio , protocols::medal::MedalMover
• fragments_small_ : protocols::hybridization::HybridizeProtocol , protocols::seeded_abinitio::SegmentHybridizer
• fragpick_list_ : protocols::abinitio::Templates
• frags_ : protocols::noesy_assign::FragsToAtomDist
• frags_for_pos_ : protocols::frag_picker::quota::QuotaCollector
• frags_large : protocols::topology_broker::CmdLineData
• frags_onflight_ : protocols::seeded_abinitio::PlaceFragments
• frags_per_pos_ : protocols::frag_picker::FragmentSelectingRule
• frags_small : protocols::topology_broker::CmdLineData
• fragset3mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio , protocols::floppy_tail::FloppyTailMover
• fragset5mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio
• fragset9mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio
• fragset_ : protocols::anchored_design::AnchorMoversData , protocols::loops::loop_closure::ccd::LoopClosure , protocols::simple_moves::FragmentMover , protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• fragset_large_ : protocols::abinitio::AbrelaxApplication , protocols::abinitio::DomainAssembly
• fragset_list_ : core::fragment::FragSetCollection
• fragset_small_ : protocols::abinitio::DomainAssembly , protocols::abinitio::AbrelaxApplication
• fragset_small_top25_ : protocols::abinitio::AbrelaxApplication
• fragset_templates_ : protocols::abinitio::AbrelaxApplication
• fragsets_ : protocols::forge::remodel::RemodelLoopMover
• frame : protocols::swa::protein::StepWiseProteinFragmentSampleGenerator
• frame_count_ : protocols::viewer::SilentObserver
• frame_pos : protocols::simple_moves::LoggedFragmentMover::Item
• frame_types_ : core::fragment::FragFactory
• frames_ : core::fragment::FragmentRmsd , protocols::rbsegment_relax::FragInsertAndAlignMover , protocols::nonlocal::BiasedFragmentMover , protocols::match::upstream::FullChiSampleSet , core::fragment::ConstantLengthFragSet , protocols::flexpack::FlexPacker , core::fragment::OrderedFragSet
• framework_info_ : protocols::antibody2::AntibodyInfo
• frdc : core::scoring::data_struct
• frdcDa : core::scoring::data_structDa
• frdcDaR : core::scoring::data_structDaR
• frdcR : core::scoring::data_structR
• free_count_ : protocols::optimize_weights::IterativeOptEDriver
• free_data_ : protocols::optimize_weights::SingleStructureData , protocols::optimize_weights::PNatRotOptERotamerData
• free_parameters_ : protocols::optimize_weights::IterativeOptEDriver
• free_score_list_ : protocols::optimize_weights::WrapperOptEMultifunc , protocols::optimize_weights::IterativeOptEDriver
• free_score_names_ : protocols::optimize_weights::WrapperOptEMultifunc
• free_term_constraints_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_term_map_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_terms_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_weights_after_minimization_ : protocols::optimize_weights::IterativeOptEDriver
• free_weights_before_minimization_ : protocols::optimize_weights::IterativeOptEDriver
• free_weights_inner_loop_ : protocols::optimize_weights::IterativeOptEDriver
• freeze_ : protocols::rigid::RigidBodyMover
• freeze_domains_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol
• freeze_h3_ : protocols::antibody::CDRH3Modeler
• freq_ : protocols::noesy_assign::CrossPeak::Spin , protocols::noesy_assign::Resonance
• Frho_calc : core::scoring::electron_density::ElectronDensity
• from_chain_ : protocols::seeded_abinitio::SwapSegment , protocols::seeded_abinitio::CAcstGenerator
• from_res_ : protocols::protein_interface_design::movers::Splice
• frs_ : protocols::kinmatch::FunGroupTK
• fsize_ : protocols::seeded_abinitio::PlaceFragments
• fstyle_A_ : protocols::scoring::methods::pcs::PCS_data_per_lanthanides
• fstyle_b_ : protocols::scoring::methods::pcs::PCS_data_per_lanthanides
• ft : core::kinematics::TreeVizBuilder
• full_align_res : protocols::swa::rna::VDW_RepScreeninfo
• FULL_ATOM : core::coarse::Rule
• full_constraint_ : protocols::ub_e2c::ubi_e2c_modeler
• full_constraint_set_ : protocols::abinitio::KinematicAbinitio
• full_length_loop_rmsd_clustering_ : protocols::swa::rna::StepWiseRNA_Clusterer
• full_name_ : core::chemical::carbohydrates::CarbohydrateInfo
• full_sequence_ : protocols::swa::monte_carlo::SubToFullInfo , protocols::swa::rna::StepWiseRNA_JobParameters
• full_sfxn_ : protocols::simple_moves::GreenPacker
• full_span_ : core::scoring::MembraneTopology
• full_stack_cutoff_ : core::scoring::rna::RNA_FullAtomStackingEnergy
• full_to_input_res_map_ONE_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• full_to_input_res_map_TWO_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• full_to_sub_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters , protocols::swa::InputStreamWithResidueInfo
• full_vdw_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_ : core::io::silent::BinaryRNASilentStruct , protocols::abinitio::IterativeAbrelax , protocols::viewer::SilentObserver , core::io::silent::RNA_SilentStruct , protocols::symmetric_docking::SymDockProtocol , core::io::silent::BinaryProteinSilentStruct , protocols::flexpep_docking::FlexPepDockingProtocol , core::io::raw_data::DecoyStruct , core::io::silent::ProteinSilentStruct_Template< T >
• fullatom_allowed_CSP_fraction_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_archive_ : protocols::abinitio::IterativeAbrelax
• fullatom_constraint_cutoff_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_CSP_weight_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_non_CSP_weight_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_pool_ptr_ : protocols::abinitio::IterativeCentroid
• fullatom_scorefunction_ : protocols::anchored_design::AnchorMoversData , protocols::floppy_tail::FloppyTailMover
• fullatom_sfx_ : protocols::forge::remodel::RemodelMover , protocols::forge::components::BDR
• fully_assigned_mm_bondangle_library_ : core::scoring::mm::MMBondAngleLibrary
• fully_assigned_mm_torsion_library_ : core::scoring::mm::MMTorsionLibrary
• fullyOccupied_ : core::grid::CartGrid< T >
• func_ : core::optimization::DescentDirectionAlgorithm , core::scoring::constraints::ConstantConstraint , core::scoring::constraints::AngleConstraint , core::optimization::Minimizer , core::scoring::constraints::EtableFunc , core::scoring::constraints::DOF_Constraint , core::scoring::custom_pair_distance::resatom_and_func_struct , core::scoring::constraints::AmbiguousNMRConstraint , core::scoring::constraints::LocalCoordinateConstraint , core::scoring::constraints::CoordinateConstraint , protocols::frag_picker::scores::AtomPairConstraintsData , protocols::frag_picker::scores::FourAtomsConstraintData , core::scoring::constraints::AmbiguousNMRDistanceConstraint , core::scoring::constraints::DihedralPairConstraint , core::scoring::constraints::DihedralConstraint , core::optimization::GA_Minimizer , core::scoring::constraints::AtomPairConstraint , core::scoring::custom_pair_distance::atoms_and_func_struct , core::scoring::constraints::DistancePairConstraint
• func_factory_ : core::scoring::constraints::ConstraintIO
• func_sd_ : protocols::forge::constraints::InverseRotamersRCG
• func_to_weight_ : core::scoring::constraints::SkipViolFunc , core::scoring::constraints::ScalarWeightedFunc , core::scoring::constraints::CountViolFunc
• func_types_ : core::scoring::constraints::FuncFactory
• funcnames_ : protocols::pack_daemon::EntityCorrespondence
• funcs_ : core::scoring::constraints::SumFunc , core::scoring::methods::CustomAtomPairEnergy
• function_names_ : protocols::pack_daemon::EntityFunc , protocols::pack_daemon::DynamicAggregateFunction
• function_tag_ : protocols::toolbox::match_enzdes_util::GeomSampleInfo
• fuzzy_topology_ : protocols::abinitio::StrandConstraints
• Fv : protocols::antibody::Antibody
• Fv_sequence_ : protocols::antibody::Antibody