- g -

• g_ : core::pack::scmin::CartSCMinMultifunc , core::pack::scmin::SCMinMultifunc , protocols::scoring::methods::pcs2::PcsTensor , protocols::scoring::methods::pcs::PCS_tensor
• G_bins : core::scoring::dna::DirectReadoutPotential
• ga_mutation_probability_ : core::optimization::MinimizerOptions
• gamma : Transformation , protocols::protein_interface_design::Transformation , protocols::swa::rna::Euler_angles , core::scoring::APBSConfig::R_PARAM
• gamma_ : core::scoring::CSA , protocols::antibody2::H3RefineCCD , protocols::dna::DNABase , protocols::swa::RigidBodySampler
• GAMMA_A_FORM : protocols::rna::RNA_HelixAssembler
• gamma_atom_names_ : core::scoring::dna::DNATorsionPotential
• gamma_components_ : core::scoring::dna::DNATorsionPotential
• gamma_increment_ : protocols::swa::RigidBodySampler
• gamma_max_ : protocols::swa::RigidBodySampler
• gamma_min_ : protocols::swa::RigidBodySampler
• gamma_potential_ : core::scoring::rna::RNA_TorsionPotential
• gap_char_ : core::sequence::Sequence
• gap_distance_cutoff_ : protocols::rna::RNA_LoopCloser
• gap_extend_ : core::sequence::ScoringScheme
• gap_open_ : core::sequence::ScoringScheme
• gap_size_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters
• gapspan_ : protocols::dna::DesignProteinBackboneAroundDNA
• garbage_collector_ : protocols::jd2::MpiFileBuffer
• gate_pssm_scores_ : core::scoring::methods::NMerPSSMEnergy
• gaussian_ : protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover
• gaussian_coeffs_ : core::scoring::SmoothScoreTermCoeffs
• gaussian_max_d : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• gaussian_param_ : core::scoring::constraints::MixtureFunc
• gaussian_parameter_costheta_exocyclic_oxygen_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_exocyclic_oxygen_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_imine_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_imine_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_nonpolar_H_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_o2star_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_o2star_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_phosphate_oxygen_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_phosphate_oxygen_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_costheta_polar_H_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_exocyclic_oxygen_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_exocyclic_oxygen_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_imine_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_imine_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_nonpolar_H_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_o2star_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_o2star_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_phosphate_oxygen_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_phosphate_oxygen_indirect_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_phosphate_p_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_polar_H_ : core::scoring::rna::RNA_Mg_KnowledgeBasedPotential
• gaussian_parameter_set_alpha_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_beta_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_chi_north_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_chi_south_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_delta_north_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_delta_south_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_epsilon_north_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_epsilon_south_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_gamma_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu1_north_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu1_south_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu2_north_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu2_south_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_ap_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_sc_minus_ : core::scoring::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_sc_plus_ : core::scoring::rna::RNA_FittedTorsionInfo
• GBpair_ : core::scoring::FACTSResidueInfo
• GBpair_cut_ : core::scoring::FACTSPotential
• GDBfileName : protocols::sparta::GDB
• gen_alg_ : protocols::dna::DnaInterfaceMultiStateDesign , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• gen_born_potential_ : core::scoring::ScoringManager
• general_obs_hub_ : core::conformation::Conformation , core::pose::Pose
• general_permit_overlap_ : protocols::match::BumpGrid
• generate_invrot_csts_ : protocols::toolbox::match_enzdes_util::InvrotTreeNode
• generations_ : protocols::dna::DnaInterfaceMultiStateDesign , protocols::genetic_algorithm::GeneticAlgorithm , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• generator_ : protocols::forge::constraints::RemoveCsts
• generator_id_ : protocols::forge::constraints::RemoveCsts
• generic_instance_ : protocols::toolbox::match_enzdes_util::EnzConstraintIO
• generic_pose_build_resids_ : protocols::match::MatcherTask
• genericRB_sigR : protocols::rbsegment_relax::RBSegmentRelax
• genericRB_sigT : protocols::rbsegment_relax::RBSegmentRelax
• GenericRBMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• geo_dim_type2name_ : core::scoring::hbonds::HBondTypeManager
• geo_sol_energy_ : protocols::features::GeometricSolvationFeatures
• geom_cst_ : protocols::toolbox::match_enzdes_util::InvrotTreeNode
• geom_cst_has_primary_modification_ : protocols::match::Matcher
• geom_cst_id_ : protocols::match::downstream::DownstreamAlgorithm
• geom_csts_downstream_output_ : protocols::match::MatcherTask
• geom_csts_with_primary_hitlist_modificiations_ : protocols::match::Matcher
• geom_id_ : protocols::match::output::WriteUpstreamHitKinemage
• geomcst_is_upstream_only_ : protocols::match::Matcher
• geomcst_seqpos_ : protocols::forge::constraints::InvrotTreeRCG
• geomcsts_for_superposition_ : protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover
• geometric_dimension_ : core::scoring::hbonds::Polynomial_1d
• geometric_sol_scale_ : core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy , core::scoring::geometric_solvation::GeometricSolEnergy
• geometry_is_initialized_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• get_bins_per_A2_ : core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_CosThetaEnergy , core::scoring::methods::LK_hack , core::scoring::rna::RNA_LJ_BaseEnergy
• ghost_loops_ : protocols::swa::protein::StepWiseProteinScreener , protocols::swa::StepWiseScreener
• ghost_map_ : protocols::swa::protein::StepWiseProteinScreener , protocols::swa::StepWiseScreener
• ghost_native_pose_ : protocols::swa::protein::StepWiseProteinScreener , protocols::swa::StepWiseScreener
• ghost_pose_ : protocols::swa::protein::StepWiseProteinScreener , protocols::swa::StepWiseScreener
• give_up_ : protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
• glen : core::scoring::APBSConfig
• glob_flag_ : core::scoring::saxs::FormFactor
• global_sample_res_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• gly_dG_ : protocols::analysis::InterfaceAnalyzerMover
• gly_switch_ : core::pack::task::operation::RestrictYSDesign
• glycorr_alt_conf_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycorr_curr_conf_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycorr_energies_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycosidic_linkage_id_ : core::chemical::carbohydrates::CarbohydrateInfo
• gmax_cutoff_for_convergence_ : core::optimization::MinimizerOptions
• good : protocols::jd2::archive::MPIArchiveJobDistributor::CompletionMessage
• good_ : protocols::abinitio::Template , protocols::abinitio::Templates
• good_angle_count : protocols::swa::rna::SillyCountStruct
• good_atr_rotamer_count : protocols::swa::rna::SillyCountStruct
• good_bin_rep_count : protocols::swa::rna::SillyCountStruct
• good_data_ : protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
• good_distance_count : protocols::swa::rna::SillyCountStruct
• good_fix_pos_ : protocols::topology_broker::RigidChunkClaimer::CM_SuggestFixResidue
• good_rep_rotamer_count : protocols::swa::rna::SillyCountStruct
• goodfrags_ : protocols::toolbox::pose_metric_calculators::FragQualCalculator
• got_chain_numbers_ : core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator
• gradient_bins_ : protocols::qsar::RenderGridsToKinemage
• gradPtr : protocols::viewer::triangleIterator
• graft_h1_ : protocols::antibody::AntibodyModeler , protocols::antibody::GraftMover , protocols::antibody2::GraftCDRLoopsProtocol
• graft_h2_ : protocols::antibody::AntibodyModeler , protocols::antibody::GraftMover , protocols::antibody2::GraftCDRLoopsProtocol
• graft_h3_ : protocols::antibody::GraftMover , protocols::antibody2::GraftCDRLoopsProtocol , protocols::antibody::AntibodyModeler
• graft_l1_ : protocols::antibody::AntibodyModeler , protocols::antibody2::GraftCDRLoopsProtocol , protocols::antibody::GraftMover
• graft_l2_ : protocols::antibody::AntibodyModeler , protocols::antibody::GraftMover , protocols::antibody2::GraftCDRLoopsProtocol
• graft_l3_ : protocols::antibody::AntibodyModeler , protocols::antibody::GraftMover , protocols::antibody2::GraftCDRLoopsProtocol
• graft_sequence_ : protocols::antibody2::GraftCDRLoopsProtocol
• graph_state_ : core::scoring::Energies
• green_packer_ : protocols::swa::protein::StepWiseProteinPacker , protocols::swa::protein::StepWiseProteinResidueSampler , protocols::swa::StepWiseResidueSampler
• grid : core::scoring::APBSConfig , core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• grid_ : protocols::qsar::RenderGridsToKinemage , protocols::match::Bool3DGrid , protocols::match::downstream::ActiveSiteGrid , protocols::pockets::PocketGrid , protocols::qsar::scoring_grid::SingleGrid , protocols::ligand_docking::Translate
• grid_atom_name_1_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_atom_name_1_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_1_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_1_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_1_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_2_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_atom_name_2_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_2_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_2_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_atom_name_2_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_centering_mode : core::scoring::APBSConfig::I_PARAM
• grid_cone_angle_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_cone_angle_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_cone_angle_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_cone_angle_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_cone_angle_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_creator_map_ : protocols::qsar::scoring_grid::GridFactory
• grid_data : core::scoring::APBSResult
• grid_edge_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_edge_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_edge_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_edge_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_edge_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_indices_ : protocols::qsar::qsarOptFunc
• grid_k_vector_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_k_vector_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_k_vector_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_k_vector_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_k_vector_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_large_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_large_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_large_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_large_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_large_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_map_ : protocols::qsar::scoring_grid::SolvationMetaGrid , protocols::qsar::scoring_grid::GridManager
• grid_map_cache_ : protocols::qsar::scoring_grid::GridManager
• grid_meta : core::scoring::APBSResult
• grid_name_ : protocols::qsar::RenderGridsToKinemage
• grid_residue_num_1_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_residue_num_1_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_1_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_1_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_1_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_2_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_residue_num_2_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_2_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_2_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_residue_num_2_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_s_p_all_ : protocols::scoring::methods::pcs2::PcsGridSearchParameterManager
• grid_small_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_small_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_small_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_small_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_small_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_spacing : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• grid_spacing_ : core::scoring::PoissonBoltzmannPotential , protocols::pockets::DelphiElectrostatics , core::scoring::electron_density::ElectronDensityOptions
• grid_step_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager
• grid_step_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_step_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_step_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_step_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController
• grid_weights_ : protocols::qsar::scoring_grid::GridManager
• gridlig_active_site_definition_ : protocols::match::MatcherTask
• gridlig_fname_ : protocols::match::MatcherTask , protocols::match::Matcher
• grids_ : protocols::match::BumpGrid
• grids_to_use_ : protocols::qsar::qsarMover
• group1_ : protocols::toolbox::ResidueGroupIGEdgeUpweighter
• group2_ : protocols::toolbox::ResidueGroupIGEdgeUpweighter
• group_ : protocols::match::output::WriteUpstreamHitKinemage , core::conformation::ResidueKinWriter , protocols::match::output::ResidueKinemageWriter
• group_discriminator_ : protocols::simple_moves::GreenPacker
• group_ids_ : protocols::simple_moves::GreenPacker , protocols::simple_moves::UserDefinedGroupDiscriminator
• group_members_ : protocols::simple_moves::GreenPacker
• group_rotamer_ : protocols::swa::rna::StepWiseRNA_RotamerGenerator
• group_size_ : protocols::cluster::Cluster
• grouper_ : protocols::match::output::CloudPDBWriter , protocols::match::output::MatchConsolidator
• grouper_ds_rmsd_ : protocols::match::MatcherTask
• grouper_name_ : protocols::match::MatcherTask
• groups_ : protocols::toolbox::pose_metric_calculators::InterGroupNeighborsCalculator
• grow_attempts_ : protocols::loops::loop_mover::IndependentLoopMover
• guarded_loops_ : protocols::loops::loop_mover::LoopMover , protocols::comparative_modeling::LoopRelaxMover
• gunn_cost_ : protocols::frag_picker::scores::GunnCostScore
• gzipped_ : protocols::checkpoint::FileBuffer