- w -

• w : protocols::pockets::NonPlaidFingerprint::float4 , protocols::simple_filters::Quat
• w1_ : protocols::sic_dock::SICFast , core::scoring::constraints::SoedingFunc
• w2_ : core::scoring::constraints::SoedingFunc , protocols::sic_dock::SICFast
• W2I_1 : protocols::sparta::ANN
• W2I_2 : protocols::sparta::ANN
• W2I_3 : protocols::sparta::ANN
• W2L1_1 : protocols::sparta::ANN
• W2L1_2 : protocols::sparta::ANN
• W2L1_3 : protocols::sparta::ANN
• W2L2_1 : protocols::sparta::ANN
• W2L2_2 : protocols::sparta::ANN
• W2L2_3 : protocols::sparta::ANN
• wait_time_ : protocols::wum2::WorkUnit_Wait
• was_modified_ : protocols::frag_picker::scores::FragmentScoreMap
• water_adduct_hbond_potential_ : core::scoring::ScoringManager
• water_builder_map_ : core::scoring::methods::LKB_ResidueInfo
• waters_ : core::scoring::methods::LKB_ResidueInfo
• wbb_bb_ : core::scoring::hackelec::weight_triple , core::scoring::hackelec::HackElecEnergy
• wbb_sc_ : core::scoring::hackelec::weight_triple , core::scoring::hackelec::HackElecEnergy
• weight : core::scoring::sc::MolecularSurfaceCalculator
• weight_ : core::scoring::constraints::ScalarWeightedFunc , core::scoring::constraints::SequenceProfileConstraint , core::scoring::constraints::SkipViolFunc , core::scoring::constraints::SplineFunc , core::scoring::constraints::TopOutFunc , core::scoring::DC , core::scoring::electron_density::OneGaussianScattering , core::scoring::hbonds::HBond , core::scoring::MinimizationNode , core::scoring::MinimizationEdge , core::scoring::AtomNeighbor , core::scoring::RDC , core::scoring::RDC_Rohl , core::scoring::SmallAtNb , core::scoring::rna::RNA_Datum , protocols::abinitio::PairingStatEntry , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::SheetConstraintsRCG , protocols::jumping::JumpSelector::JumpWeightDef , protocols::moves::MoverContainer , core::chemical::Element , protocols::pockets::PocketConstraint , protocols::qsar::scoring_grid::GridCreator , core::coarse::Translator::BeadAtom , protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcs::PCS_file_data , core::io::silent::SilentEnergy , protocols::scoring::methods::pcs2::PcsDataLanthanide , protocols::scoring::methods::pcs2::PcsInputFile , core::scoring::CSA , protocols::simple_moves::FavorSequenceProfile , protocols::topology_broker::weights::ConstAbinitioMoverWeight , core::scoring::constraints::CircularPowerFunc , protocols::topology_broker::weights::LargeFragWeight , protocols::topology_broker::weights::SmallFragWeight , core::scoring::constraints::CountViolFunc , protocols::topology_broker::weights::SmoothFragWeight
• weight_factor_ : protocols::toolbox::ResidueGroupIGEdgeUpweighter , protocols::toolbox::IGLigandDesignEdgeUpweighter
• weight_func_ : core::scoring::AtomNeighbor
• weight_map_ : protocols::toolbox::pose_metric_calculators::EnergiesData
• WEIGHT_Tab : protocols::sparta::Sparta::SpartaLib
• weight_type2name_ : core::scoring::hbonds::HBondTypeManager
• weight_type_lookup_ : core::scoring::hbonds::HBondDatabase
• weighted_counts_ : protocols::canonical_sampling::SimulatedTempering
• weighted_sampler_ : protocols::canonical_sampling::MetropolisHastingsMover , protocols::hybridization::WeightedFragmentSmoothTrialMover , protocols::hybridization::WeightedFragmentTrialMover
• weighted_total_ : core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator , protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• weightFileName : protocols::sparta::Sparta::SpartaLib
• weights_ : core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator , core::scoring::constraints::SOGFunc_Impl , core::scoring::constraints::USOGFunc , core::scoring::disulfides::Cb_Distance_Func , core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::hbonds::HBondEnergy , core::scoring::methods::ReferenceEnergyNoncanonical , core::scoring::packstat::PackingScore , core::scoring::ScoreFunction , protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD , protocols::canonical_sampling::SimulatedTempering , protocols::filters::IfThenFilter , protocols::frag_picker::CompareByScoreCombination , protocols::frag_picker::DiversifyCrmsdByClustering , protocols::frag_picker::DiversifyCrmsdSelector , protocols::frag_picker::quota::ABEGO_SS_Pool , protocols::frag_picker::quota::SecondaryStructurePool , protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentDME , protocols::sic_dock::CBScore , protocols::sic_dock::JointScore , protocols::toolbox::DecoySetEvaluation
• well_depth_ : core::scoring::constraints::FadeFunc , core::scoring::constraints::LinearPenaltyFunction , core::scoring::constraints::SquareWell2Func , core::scoring::constraints::SquareWellFunc
• well_depth_burial_ : core::scoring::rna::RNA_DataBackboneEnergy
• well_depth_exposed_ : core::scoring::rna::RNA_DataBackboneEnergy
• well_offset_ : core::scoring::constraints::FadeFunc
• wfa_atr_ : protocols::match::output::MatchCollisionFilter
• wfa_rep_ : protocols::match::output::MatchCollisionFilter
• wfa_sol_ : protocols::match::output::MatchCollisionFilter
• which_chain_has_moving_res_ : protocols::swa::StepWiseJobParameters
• which_chi_ : core::pack::task::EX
• which_component_ : core::scoring::constraints::MinMultiHarmonicFunc
• which_cst_being_processed_ : protocols::match::output::UpstreamHitCacher
• which_geom_cst_ : protocols::match::TaskOperationMPM
• which_jump_ : protocols::swa::protein::StepWiseProteinJumpSampleGenerator , protocols::swa::protein::StepWiseProteinResidueSampler
• which_netstate_worst_top_ : core::pack::annealer::MultiCoolAnnealer
• which_point_for_atom_ : protocols::match::upstream::UpstreamResTypeGeometry
• which_scratch_res_is_cut_ : protocols::coarse_rna::CoarseRNA_LoopCloser
• which_side : core::scoring::rna::Base_stack
• which_torsions_ : protocols::swa::protein::StepWiseProteinCCD_Closer , protocols::swa::protein::StepWiseProteinLoopBridger , protocols::swa::protein::StepWiseProteinMainChainSampleGenerator , protocols::swa::protein::StepWiseProteinResidueSampler
• whole_interface_ : protocols::simple_filters::EnergyPerResidueFilter , protocols::simple_filters::ResidueIEFilter
• whole_line : core::scoring::packstat::SimplePDB_Atom
• whole_pose_ : protocols::enzdes::EnzScoreFilter , protocols::simple_filters::ResidueIEFilter
• whole_pose_context_enmeths_ : core::scoring::MinimizationGraph
• whole_struct_cluster_radius_ : protocols::swa::rna::StepWiseRNA_Clusterer
• WholeStructureMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• WI_1 : protocols::sparta::ANN
• WI_2 : protocols::sparta::ANN
• WI_3 : protocols::sparta::ANN
• wide_move_tolerance_sqr_ : core::scoring::NeighborList
• wide_nblist_ : core::scoring::NeighborList
• wide_nblist_extension_ : core::scoring::NeighborList
• wide_reference_coords_ : core::scoring::NeighborList
• width : core::scoring::rna::Gaussian_parameter
• width_ : core::io::silent::SilentEnergy , protocols::qsar::scoring_grid::GridManager , protocols::viewer::ConformationViewer , protocols::frag_picker::scores::FragmentScoreManager
• wiggle_cdr_h3_ : protocols::antibody2::H3RefineCCD
• wildcard_mm_bondangle_library_ : core::scoring::mm::MMBondAngleLibrary
• wildcard_mm_torsion_library_ : core::scoring::mm::MMTorsionLibrary
• WINDOW_ : core::scoring::electron_density::ElectronDensity
• window_ : protocols::noesy_assign::FoldResonance
• window_acceptance_ratio_ : protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
• window_size_ : protocols::loophash::LoopHashDiversifier
• winning_address_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• winning_ranks_ : protocols::canonical_sampling::mc_convergence_checks::TransferBuffer , protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• winning_tag_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• within1bonds_sets_for_atom_ : core::chemical::ResidueType
• within2bonds_sets_for_atom_ : core::chemical::ResidueType
• WL1_1 : protocols::sparta::ANN
• WL1_2 : protocols::sparta::ANN
• WL1_3 : protocols::sparta::ANN
• WL2_1 : protocols::sparta::ANN
• WL2_2 : protocols::sparta::ANN
• WL2_3 : protocols::sparta::ANN
• work_dir_ : protocols::simple_filters::ExternalEvaluator
• work_unit_list_ : protocols::wum::WorkUnitList , protocols::wum::WorkUnitManager
• worker_initialized_ : protocols::boinc::Boinc
• worker_running_ : protocols::boinc::Boinc
• workers_finished_ : protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
• working_align_pose_ : protocols::swa::StepWisePoseSetup
• working_align_res : protocols::swa::rna::VDW_RepScreeninfo
• working_best_alignment_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_bridge_res_ : protocols::swa::protein::StepWiseProteinLoopBridger , protocols::swa::protein::StepWiseProteinCCD_Closer , protocols::swa::StepWiseJobParameters
• working_calc_rms_res_ : protocols::swa::StepWiseJobParameters
• working_fixed_res_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters
• working_force_north_ribose_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_force_south_ribose_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_force_syn_chi_res_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_global_sample_res_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_model_ : protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelMover , protocols::forge::remodel::RemodelAccumulator
• working_moving_partition_pos_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_moving_res_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_moving_res_list_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters
• working_moving_suite_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_moving_suite_list_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters
• working_native_alignment_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_native_pose : protocols::swa::StepWisePoseSetup
• working_native_pose_ : protocols::swa::StepWiseJobParameters , protocols::swa::rna::StepWiseRNA_JobParameters
• working_protonated_H1_adenosine_list_ : protocols::swa::rna::StepWiseRNA_JobParameters
• working_res_list_ : protocols::swa::StepWiseJobParameters
• working_rmsd_res_ : protocols::swa::rna::StepWiseRNA_ResidueSampler , protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler
• working_sequence_ : protocols::swa::rna::StepWiseRNA_JobParameters , protocols::swa::StepWiseJobParameters
• working_set_size_ : protocols::boinc::Boinc
• working_set_size_max_val_ : protocols::boinc::Boinc
• working_superimpose_res_ : protocols::swa::StepWiseJobParameters
• working_terminal_res_ : protocols::swa::StepWiseJobParameters , protocols::swa::rna::StepWiseRNA_JobParameters
• working_to_sliced_res_map_ : protocols::swa::rna::SlicedPoseJobParameters
• worst_ : protocols::frag_picker::BoundedPriorityQueue< T, StrictWeakOrdering > , protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
• worst_allowed_stub_bonus_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
• worst_combine_score_ : protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
• worst_top_energy_ : core::pack::annealer::MultiCoolAnnealer
• Wradius : core::scoring::etable::EtableOptions , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• wrapped_opt_min_ : protocols::optimize_weights::IterativeOptEDriver
• wrapped_phipsi_bins_ : protocols::match::VoxelSetIterator
• wrapped_phipsi_halfbins_ : protocols::match::VoxelSetIterator
• write2pdb_ : protocols::simple_filters::RotamerBoltzmannWeight , protocols::protein_interface_design::filters::SequenceRecoveryFilter
• write_apolar_hydrogens_ : core::conformation::ResidueKinWriter
• write_atom_names_ : protocols::noesy_assign::PeakFileFormat
• write_atompot : core::scoring::APBSConfig::I_PARAM
• write_backbone_hydrogens_ : core::conformation::ResidueKinWriter
• write_charge : core::scoring::APBSConfig::I_PARAM
• write_diel : core::scoring::APBSConfig::I_PARAM
• write_empty_voxels_ : protocols::match::Bool3DGridKinemageWriter
• write_facets_ : protocols::match::Bool3DGridKinemageWriter
• write_int_area_ : protocols::simple_filters::ShapeComplementarityFilter
• write_kappa : core::scoring::APBSConfig::I_PARAM
• write_matchres_only_ : protocols::match::output::PDBWriter
• write_only_highest_VC_ : protocols::noesy_assign::PeakFileFormat_Base
• write_polar_hydrogens_ : core::conformation::ResidueKinWriter
• write_pot : core::scoring::APBSConfig::I_PARAM
• write_scorefile_ : protocols::jd2::FileJobOutputter
• write_separate_scorefile_ : protocols::jd2::SilentFileJobOutputter
• write_smol : core::scoring::APBSConfig::I_PARAM
• write_to_file_ : protocols::swa::rna::StepWiseRNA_VDW_Bin_Screener
• write_virtual_atoms_ : core::conformation::ResidueKinWriter , core::conformation::ConformationKinWriter , protocols::match::output::WriteUpstreamHitKinemage , protocols::match::output::ResidueKinemageWriter
• writer_ : protocols::match::output::MatchProcessor
• ws_methods_ : core::scoring::ScoreFunction
• wsc_sc_ : core::scoring::hackelec::HackElecEnergy , core::scoring::hackelec::weight_triple
• wt : core::scoring::dna::DirectReadoutPotential
• wt_ : protocols::canonical_sampling::PatchOperation , protocols::simple_moves::symmetry::SetupNCSMover
• wt_aa_ : protocols::optimize_weights::DDGMutationOptEData , core::io::PositionDdGInfo::PositionDdGInfo
• wt_complexes_ : protocols::optimize_weights::DDGBindOptEData
• wt_components_ : protocols::ddg::ddGMover
• wt_residue_ : protocols::pmut_scan::MutationData
• wt_unbound_components_ : protocols::ddg::ddGMover
• wt_unbounds_ : protocols::optimize_weights::DDGBindOptEData
• wt_unfolded_energies_emap_ : protocols::optimize_weights::NestedEnergyTermDDGMutationOptEData
• wtD_ : protocols::simple_moves::symmetry::SetupNCSMover
• wts_ : protocols::optimize_weights::DDGMutationOptEData
• wu_desc_buf : protocols::boinc::BoincSharedMemory
• wu_desc_exists : protocols::boinc::BoincSharedMemory
• wu_type_ : protocols::wum::WorkUnitBase::WU_Header
• wum_ : protocols::wum::WorkUnitQueue_Swapped
• wus_ : protocols::wum::WorkUnitQueue