Here is a list of all namespace members with links to the namespace documentation for each member:

- b -

• B : protocols::comparative_modeling::features , protocols::features
• b : protocols::match::upstream
• BAB_CFr : protocols::fldsgn::topology
• BABx1 : protocols::fldsgn::topology
• BABx2 : protocols::fldsgn::topology
• BABx3 : protocols::fldsgn::topology
• BACKBONE : protocols::noesy_assign
• backbone_stub_constraint : core::scoring
• backbone_stub_match() : protocols::motifs
• BackboneIndexMap : protocols::loophash
• BackboneMoverCOP : protocols::simple_moves
• BackboneMoverOP : protocols::simple_moves
• BackboneStubConstraintCOP : core::scoring::constraints
• BackboneStubConstraintCOPs : core::scoring::constraints
• BackboneStubConstraintOP : core::scoring::constraints
• BackboneStubConstraintOPs : core::scoring::constraints
• backrub_rotation_angles() : protocols::backrub
• backrub_rotation_constants() : protocols::backrub
• BackrubMoverCOP : protocols::backrub
• BackrubMoverOP : protocols::backrub
• BackrubSidechainMoverCOP : protocols::backrub
• BackrubSidechainMoverOP : protocols::backrub
• bad_anchorfile() : protocols::anchored_design
• BAD_INPUT : protocols::jd2
• BAD_INPUT_TAG : protocols::jd2
• bailout_mutex : protocols::boinc::watchdog
• bailout_silent_structure : protocols::boinc::watchdog
• bailout_silent_structure_header : protocols::boinc::watchdog
• base_atoms_square_deviation() : protocols::swa::rna
• Base_centroid_screening() : protocols::swa::rna
• base_name() : protocols::vip
• BaseCacheUnitAP : core::fragment
• BaseCacheUnitOP : core::fragment
• BaseJobDistributorOP : protocols::jobdist
• BaseJumpSetupCOP : protocols::jumping
• BaseJumpSetupOP : protocols::jumping
• BasePairingLibraryCOP : protocols::jumping
• BasePairingLibraryOP : protocols::jumping
• BasePartnerOP : core::scoring::dna
• BaseRoleSP : protocols::elscripts
• bases_are_coplanar() : protocols::rna
• bases_form_a_hydrogen_bond() : protocols::rna
• BaseState : protocols::swa::rna
• basic_idealize() : protocols::idealize
• BasicJobCOP : protocols::jobdist
• BasicJobOP : protocols::jobdist
• BasicSimAnnealerRepackerCOP : protocols::pack_daemon
• BasicSimAnnealerRepackerOP : protocols::pack_daemon
• BATCH_SYNC : protocols::jd2::archive
• BatchFeaturesCOP : protocols::features
• BatchFeaturesOP : protocols::features
• BatchJobInputterOP : protocols::jd2
• BB : core::id , protocols::sic_dock
• bb_independent_rotamers() : core::pack::rotamer_set
• bb_rmsd() : core::scoring
• bb_rmsd_including_O() : core::scoring
• BBClaimAP : protocols::topology_broker
• BBClaimCAP : protocols::topology_broker
• BBClaimCOP : protocols::topology_broker
• BBClaimOP : protocols::topology_broker
• BBConRotMoverCOP : protocols::simple_moves
• BBConRotMoverOP : protocols::simple_moves
• BBdisplayState : protocols::viewer::graphics_states_param
• BBG8T3AMoverCOP : protocols::simple_moves
• BBG8T3AMoverOP : protocols::simple_moves
• BBGaussianMoverCOP : protocols::simple_moves
• BBGaussianMoverOP : protocols::simple_moves
• BBTorsionSRFDCOP : core::fragment
• BBTorsionSRFDOP : core::fragment
• BDR_AP : protocols::forge::components
• BDR_CAP : protocols::forge::components
• BDR_COP : protocols::forge::components
• BDR_OP : protocols::forge::components
• BEFr : protocols::fldsgn::topology
• Begin : protocols::antibody2
• BeginEndEnum : protocols::antibody2
• best_bbcst_residues() : protocols::protein_interface_design
• best_cutpoint() : protocols::protein_interface_design
• BestMatchesCollectionCOP : protocols::match::output
• BestMatchesCollectionOP : protocols::match::output
• BestTotalScoreSelectorCOP : protocols::frag_picker
• BestTotalScoreSelectorOP : protocols::frag_picker
• BETA : core::scoring::dna , core::scoring::rna
• BETA_NON_METHYL : protocols::noesy_assign
• BetaAlphaBetaMotifCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifs : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetOP : protocols::fldsgn::topology
• BetaTurnDetectionFeaturesCOP : protocols::features
• BetaTurnDetectionFeaturesOP : protocols::features
• BFr : protocols::fldsgn::topology
• BiasedFragmentMoverCOP : protocols::nonlocal
• BiasedFragmentMoverOP : protocols::nonlocal
• bicubic_interpolation() : core::pack::dunbrack
• big_bin_constraint : core::scoring
• BigBinConstraintCreator_registrator : core
• biggest_residue_deviation_no_super() : core::scoring
• biggest_residue_deviation_no_super_subset() : core::scoring
• bin_by_seq_separation() : core::scoring::constraints
• BinaryProteinSilentStructCreator_registrator : core
• BinaryProteinSilentStructOP : core::io::silent
• BinaryRNASilentStructCreator_registrator : core
• BindingStrainFilterCOP : protocols::protein_interface_design::filters
• BindingStrainFilterOP : protocols::protein_interface_design::filters
• bit_count : core::scoring::packstat::old , core::scoring
• BluePrintBDR_AP : protocols::fldsgn
• BluePrintBDR_CAP : protocols::fldsgn
• BluePrintBDR_COP : protocols::fldsgn
• BluePrintBDR_OP : protocols::fldsgn
• BluePrintCOP : protocols::jd2::parser
• BluePrintOP : protocols::flxbb , protocols::jd2::parser
• BNP : protocols::sic_dock
• BOGUS_ASSIGNMENT : protocols::noesy_assign
• BOGUS_ATOM_ID : core::id
• BOGUS_DOF_ID : core::id
• BOGUS_ENERGY() : core::scoring
• BOGUS_JUMP : core::kinematics::tree
• BOGUS_NAMED_ATOM_ID : core::id
• BOGUS_STUB_ID : core::id
• BOGUS_TORSION_ID : core::id
• BoincCurrentPoseObserverOP : protocols::boinc
• BoltzmannFilterCOP : protocols::protein_interface_design::filters
• BoltzmannFilterOP : protocols::protein_interface_design::filters
• bondangle_atom_set : core::chemical
• BondAngleDatabaseOP : protocols::features
• BondedAtomAP : core::kinematics::tree
• BondedAtomCAP : core::kinematics::tree
• BondedAtomCOP : core::kinematics::tree
• BondedAtomOP : core::kinematics::tree
• BondLength : core::chemical
• BondName : core::chemical
• Bool3DGridCOP : protocols::match
• Bool3DGridOP : protocols::match
• boolean_operations : protocols::filters
• BOOLEAN_OR : protocols::simple_filters
• bools_from_sizes() : protocols::motifs
• BOTH : protocols::swa::rna
• bounded_loops_from_alignment() : protocols::comparative_modeling
• BoundedQuotaContainer : protocols::frag_picker::quota
• BoundedQuotaContainerOP : protocols::frag_picker::quota
• BoundFuncCOP : core::scoring::constraints
• BoundFuncOP : core::scoring::constraints
• BoundingBox : protocols::loophash
• bpdefs2map() : protocols::motifs
• BRANCH_LOWER_TERMINUS : core::chemical
• BRANCH_POINT() : core::chemical
• branching_atomid1() : protocols::branch_angle
• branching_atomids2() : protocols::branch_angle
• BridgeAP : protocols::forge::build
• BridgeCAP : protocols::forge::build
• BridgeCOP : protocols::forge::build
• BridgeOP : protocols::forge::build
• Broker_main() : protocols::abinitio
• build_acceptor_acceptor_waters() : core::pack::rotamer_set
• build_chemical_edge() : core::conformation
• build_dependent_water_rotamers() : core::pack::rotamer_set
• build_dna_rotamers() : core::pack::rotamer_set
• build_donor_acceptor_waters() : core::pack::rotamer_set
• build_donor_donor_waters() : core::pack::rotamer_set
• build_fixed_O_water_rotamers_independent() : core::pack::rotamer_set
• build_independent_water_rotamers() : core::pack::rotamer_set
• build_jump_edge() : core::conformation
• build_lib_dna_rotamers() : core::pack::rotamer_set
• build_moving_O_bridge_waters() : core::pack::rotamer_set
• build_moving_O_water_rotamers_dependent() : core::pack::rotamer_set
• build_moving_O_water_rotamers_independent() : core::pack::rotamer_set
• build_optimal_water_O_on_donor() : core::pack::rotamer_set , core::scoring::methods
• build_optimal_water_Os_on_acceptor() : core::pack::rotamer_set , core::scoring::methods
• build_polymer_edge() : core::conformation
• build_pose() : core::import_pose
• build_pose_as_is() : core::import_pose
• build_pose_as_is1() : core::io::pdb
• build_pose_as_is2() : core::import_pose
• build_pose_from_pdb_as_is() : core::io::pdb
• build_random_dna_rotamers() : core::pack::rotamer_set
• build_residue_tree() : core::conformation
• build_rna_chi_rotamers() : core::pack::rotamer_set
• build_rna_rotamers() : core::pack::rotamer_set
• build_rotamers_lite() : protocols::motifs
• build_tree() : core::conformation
• BuildAlaPoseCOP : protocols::protein_interface_design::movers
• BuildAlaPoseOP : protocols::protein_interface_design::movers
• BuildInstructionAP : protocols::forge::build
• BuildInstructionCAP : protocols::forge::build
• BuildInstructionCOP : protocols::forge::build
• BuildInstructionOP : protocols::forge::build
• BuildManagerAP : protocols::forge::build
• BuildManagerCAP : protocols::forge::build
• BuildManagerCOP : protocols::forge::build
• BuildManagerOP : protocols::forge::build
• BuildPositionCOP : protocols::motifs
• BuildPositionCOPs : protocols::motifs
• BuildPositionOP : protocols::motifs
• BuildPositionOPs : protocols::motifs
• bump_grid_to_enclose_pose() : protocols::match
• bump_grid_to_enclose_residue() : protocols::match
• bump_grid_to_enclose_residue_backbone() : protocols::match
• BumpGridCOP : protocols::match
• BumpGridOP : protocols::match
• BumpSelectorDecision : core::pack::rotamer_set
• burial : core::scoring
• burial3class_weight_initializer() : core::scoring::hbonds
• burial_weight() : core::scoring::hbonds
• BurialCreator_registrator : core
• buried_unsat_hbond_filter_tracer() : protocols::simple_filters