Here is a list of all namespace members with links to the namespace documentation for each member:

- f -

• fa_atr : core::scoring
• fa_cust_pair_dist : core::scoring
• fa_custom_pair_dist_data : core::scoring
• fa_disulfide_energy : core::scoring::methods
• fa_dslf_respair_data : core::scoring
• fa_dun : core::scoring
• fa_dun_dev : core::scoring
• fa_dun_rot : core::scoring
• fa_dun_semi : core::scoring
• fa_intra_atr : core::scoring
• fa_intra_rep : core::scoring
• fa_intra_RNA_base_phos_atr : core::scoring
• fa_intra_RNA_base_phos_rep : core::scoring
• fa_intra_RNA_base_phos_sol : core::scoring
• fa_intra_sol : core::scoring
• fa_mbenv : core::scoring
• Fa_MbenvEnergyCreator_registrator : core
• Fa_MbenvEnergyOP : core::scoring::methods
• fa_mbsolv : core::scoring
• Fa_MbsolvEnergyCreator_registrator : core
• fa_pair : core::scoring
• fa_pair_aro_aro : core::scoring
• fa_pair_aro_pol : core::scoring
• fa_pair_pol_pol : core::scoring
• fa_plane : core::scoring
• fa_rep : core::scoring
• FA_REP_SCORE : core::conformation::symmetry
• fa_sol : core::scoring
• fa_stack : core::scoring
• fa_stack_aro : core::scoring
• FA_STANDARD() : core::chemical
• FA_STANDARD_DEFAULT : core::scoring
• FA_STANDARD_SOFT : core::scoring
• FabConstraintCOP : core::scoring::constraints
• FabConstraintCreator_registrator : core
• FabConstraintOP : core::scoring::constraints
• facet_containing_position() : protocols::forge::methods
• factorsLTE19() : core::scoring::electron_density
• factorsLTE5() : core::scoring::electron_density
• FACTSPoseInfoOP : core::scoring
• FACTSPotentialCOP : core::scoring
• FACTSPotentialOP : core::scoring
• FACTSResidueInfoOP : core::scoring
• FACTSRotamerSetInfoOP : core::scoring
• FadeFuncCOP : core::scoring::constraints
• FadeFuncOP : core::scoring::constraints
• FadeIntervalCOP : core::scoring::hbonds
• FadeIntervalOP : core::scoring::hbonds
• FaDockingSlideIntoContactCOP : protocols::docking
• FaDockingSlideIntoContactOP : protocols::docking
• FAIL_BAD_INPUT : protocols::moves
• FAIL_DO_NOT_RETRY : protocols::moves
• FAIL_RETRY : protocols::moves
• Failure : protocols::loops::loop_mover
• fake_hit() : protocols::match
• fall_back() : protocols::noesy_assign
• FArray1D_Energy : core::scoring
• FArray1D_Length : core::scoring
• FArray1D_Probability : core::scoring
• FArray1D_Real : core::scoring::dna
• FArray1D_TableEnergy : core::scoring
• FArray1D_TableProbability : core::scoring
• FArray1D_Weight : core::scoring
• FArray2D_double : protocols::canonical_sampling::mc_convergence_checks
• FArray2D_Energy : core::scoring
• FArray2D_Length : core::scoring
• FArray2D_Probability : core::scoring
• FArray2D_TableEnergy : core::scoring
• FArray2D_TableProbability : core::scoring
• FArray2D_Weight : core::scoring
• FArray3D_double : protocols::canonical_sampling::mc_convergence_checks
• FArray3D_Energy : core::scoring
• FArray3D_Length : core::scoring
• FArray3D_Probability : core::scoring
• FArray3D_TableEnergy : core::scoring
• FArray3D_TableProbability : core::scoring
• FArray3D_Weight : core::scoring
• FArray4D_Energy : core::scoring
• FArray4D_Length : core::scoring
• FArray4D_Probability : core::scoring
• FArray4D_TableEnergy : core::scoring
• FArray4D_TableProbability : core::scoring
• FArray4D_Weight : core::scoring
• FArray5D_Energy : core::scoring
• FArray5D_Length : core::scoring
• FArray5D_Probability : core::scoring
• FArray5D_TableEnergy : core::scoring
• FArray5D_TableProbability : core::scoring
• FArray5D_Weight : core::scoring
• FASelectSlidingWindowLoopClosureCOP : protocols::loops::loop_closure::ccd
• FASelectSlidingWindowLoopClosureOP : protocols::loops::loop_closure::ccd
• fast2DRotAlignPose() : protocols::electron_density
• fast_ccd_close_loops() : protocols::loops::loop_mover::perturb
• fast_ccd_loop_closure() : protocols::loops::loop_closure::ccd
• fast_clash_check() : protocols::forge::remodel , protocols::toolbox::pose_metric_calculators
• fast_full_atom_VDW_repulsion_screen() : protocols::swa::rna
• FastaInputterSP : protocols::inputter
• FastDensEnergyCreator_registrator : core
• FASTERAnnealerCOP : core::pack::annealer
• FASTERAnnealerOP : core::pack::annealer
• FASTERInteractionGraphCOP : core::pack::interaction_graph
• FASTERInteractionGraphOP : core::pack::interaction_graph
• FastGapMoverCOP : protocols::loophash
• FastGapMoverOP : protocols::loophash
• FastRelaxAP : protocols::relax
• FastRelaxCAP : protocols::relax
• FastRelaxCOP : protocols::relax
• FastRelaxOP : protocols::relax
• fastsaxs : core::scoring
• FastSAXSEnergyCreator_registrator : core
• fastTransAlignPose() : protocols::electron_density
• FaSymDockingSlideTogetherCOP : protocols::simple_moves::symmetry
• FaSymDockingSlideTogetherOP : protocols::simple_moves::symmetry
• favor_nonnative_residue_tracer() : protocols::protein_interface_design::movers
• Fd_like : protocols::fldsgn::topology
• FeaturesReporterCOP : protocols::features
• FeaturesReporterCreatorCOP : protocols::features
• FeaturesReporterCreatorOP : protocols::features
• FeaturesReporterOP : protocols::features
• FibrilModelingClaimerAP : protocols::topology_broker
• FibrilModelingClaimerCAP : protocols::topology_broker
• FibrilModelingClaimerCOP : protocols::topology_broker
• FibrilModelingClaimerOP : protocols::topology_broker
• figure_out_base_pair_orientation() : protocols::rna
• Figure_out_moving_residues() : protocols::swa
• figure_out_number_base_contacts() : protocols::rna
• figure_out_reasonable_rna_fold_tree() : protocols::rna
• figure_out_repackable_residues() : core::pack
• figure_out_secstruct() : protocols::rna
• file_exists() : protocols::swa::rna
• file_full_path() : protocols::toolbox
• file_is_atom_tree_diff() : core::import_pose::atom_tree_diffs
• FileDataOptionsCOP : core::io::pdb
• FileDataOptionsOP : core::io::pdb
• FileJobOutputterOP : protocols::jd2
• filename() : protocols::abinitio
• FileName : core::import_pose::pose_stream
• filenames_from_list_file() : core::import_pose::pose_stream
• fill_A_line() : protocols::scoring::methods::pcs
• fill_A_line_fast() : protocols::scoring::methods::pcs2
• fill_A_line_slow() : protocols::scoring::methods::pcs2
• fill_bb_pos() : core::scoring
• fill_CA_coords() : protocols::toolbox
• fill_chi_rotamers_with_center_and_stddev() : core::pack::rotamer_set
• fill_grid_with_backbone_heavyatom_spheres() : protocols::match
• fill_grid_with_residue_heavyatom_spheres() : protocols::match
• fill_grid_with_residue_spheres() : protocols::match
• fill_hbond_bb_pair_score_dssp() : core::scoring::dssp
• fill_hbond_set() : core::scoring::hbonds
• fill_hbond_set_by_AHdist_threshold() : core::scoring::hbonds
• fill_in_chain_terminii() : core::pack::task::operation::util
• fill_intra_res_hbond_set() : core::scoring::hbonds
• fill_non_loop_cst_set() : protocols::forge::methods
• fill_plane_hash() : protocols::sic_dock
• fill_rmsd_coordinates() : core::scoring
• fill_score_range() : core::scoring
• fill_tags_() : protocols::jumping
• fill_template_frames_from_pdb() : core::fragment
• filter_chem_shift_data_list() : core::scoring::rna::chemical_shift
• filter_loop_neighbors_by_distance() : protocols::loops
• filter_pareto_opt_poses() : protocols::design_opt
• FilterCollectionCOP : protocols::filters
• FilterCollectionOP : protocols::filters
• FilterCOP : protocols::filters
• FilterCOPs : protocols::filters
• FilterCreatorCOP : protocols::filters
• FilterCreatorOP : protocols::filters
• FilterFactoryCOP : protocols::filters
• FilterFactoryOP : protocols::filters
• FilterMoverOP : protocols::moves
• FilterOP : protocols::filters
• FilterOPs : protocols::filters
• Filters_map : protocols::filters
• FilterScanFilterCOP : protocols::protein_interface_design::filters
• FilterScanFilterOP : protocols::protein_interface_design::filters
• FilterSP : protocols::filters
• FilterStructs_PackstatOP : protocols::flxbb
• FilterStructs_TotalChargeOP : protocols::flxbb
• FilterStructsOP : protocols::flxbb
• FinalMinimizer_tracer() : protocols::ligand_docking
• FinalMinimizerCOP : protocols::ligand_docking
• FinalMinimizerCOPs : protocols::ligand_docking
• FinalMinimizerOP : protocols::ligand_docking
• FinalMinimizerOPs : protocols::ligand_docking
• find_attach_pt() : protocols::ligand_docking
• find_basepairs() : core::scoring::dna , protocols::dna
• Find_Closest_Intersect_SQ() : protocols::pockets
• find_connected_components() : core::graph
• find_connecting_jump() : protocols::forge::methods
• find_cutpoint() : protocols::forge::methods
• find_cutpoint_variants() : core::scoring::methods
• find_existing_residues() : protocols::evaluation
• find_filter_or_die() : protocols::moves
• find_interface_pointing_residues_from_neighbs() : core::pack::task::operation::util
• find_jump_partners_within_CB_cutoff() : core::pack::task::operation::util
• find_ligands() : protocols::flxbb
• find_lowest_constraint_energy_residue() : protocols::protein_interface_design
• find_mover_or_die() : protocols::moves
• find_nearest_res() : protocols::rosetta_scripts
• find_nearest_residue() : protocols::protein_interface_design , protocols::seeded_abinitio
• find_nearest_residue_to_coord() : protocols::protein_interface_design::movers
• find_neighbors() : core::conformation
• find_neighbors_3dgrid() : core::conformation
• find_neighbors_3dgrid_restricted() : core::conformation
• find_neighbors_naive() : core::conformation
• find_neighbors_naive_restricted() : core::conformation
• find_neighbors_naive_surface() : core::conformation
• find_neighbors_octree() : core::conformation
• find_neighbors_octree_restricted() : core::conformation
• find_neighbors_restricted() : core::conformation
• find_neighbors_stripe() : core::conformation
• find_neighbors_within_CB_cutoff() : core::pack::task::operation::util
• find_new_symmetric_jump_residues() : core::pose::symmetry
• find_non_protein_chunks() : protocols::loops
• find_peptide_attach_pt() : protocols::ligand_docking
• find_regions_with_minimum_size() : protocols::nonlocal
• find_res_unsat_polars() : protocols::toolbox::pose_metric_calculators
• find_residue_max_radii() : core::pack
• find_residues_on_chain1_outside_interface() : protocols::protein_interface_design::movers
• find_sampling_cuts() : protocols::abinitio
• find_stub_transform() : core::kinematics
• find_symmetric_basejump_anchor() : core::pose::symmetry
• find_unconnected_residues() : protocols::ligand_docking
• find_uncovered_residues() : protocols::hybridization
• find_weights_file() : core::scoring
• FindBoundaries() : core::fragment
• findLoopFromDensity() : protocols::electron_density
• findLoopFromPatterson() : protocols::electron_density
• findSampling() : core::scoring::electron_density
• findSampling5() : core::scoring::electron_density
• FINISHED : protocols::canonical_sampling::mc_convergence_checks
• first_base_atom() : core::scoring::rna
• first_base_atom_index() : core::scoring::rna
• first_DNA_aa : core::chemical
• fit_centered_coords() : protocols::toolbox
• fix_chainbreak_patch() : protocols::abinitio
• fix_end_phi_psi() : protocols::swa::protein
• fix_internal_coords_of_siblings() : protocols::topology_broker
• fix_mainchain_connect() : protocols::topology_broker
• fix_sugar_coords() : core::scoring::rna
• fix_sugar_coords_WORKS_BUT_SLOW() : core::scoring::rna
• fix_tag_suffix() : protocols::toolbox
• fix_with_coord_cst() : protocols::loops
• fix_worst_bad_ramas() : protocols::relax
• FixbbRotamerSetsCOP : core::pack::rotamer_set
• FixbbRotamerSetsOP : core::pack::rotamer_set
• FixbbSimAnnealerOP : core::pack::annealer
• FIXED_DOMAIN : protocols::toolbox
• FixedBBInteractionGraphCOP : core::pack::interaction_graph
• FixedBBInteractionGraphOP : core::pack::interaction_graph
• fixH() : protocols::forge::methods
• FlatHarmonicFuncCOP : core::scoring::constraints
• FlatHarmonicFuncOP : core::scoring::constraints
• flatten_list() : core::fragment
• Flavodoxin : protocols::fldsgn::topology
• FlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
• FlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
• FlexbbRotamerSetCOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsCAP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsCOP : protocols::flexpack::rotamer_set
• FlexbbRotamerSetsOP : protocols::flexpack::rotamer_set
• FlexbbSimAnnealerOP : protocols::flexpack::annealer
• FlexPackerCOP : protocols::flexpack
• FlexPackerOP : protocols::flexpack
• FlexPepDockingAbInitioCOP : protocols::flexpep_docking
• FlexPepDockingAbInitioOP : protocols::flexpep_docking
• FlexPepDockingFlagsAP : protocols::flexpep_docking
• FlexPepDockingFlagsCAP : protocols::flexpep_docking
• FlexPepDockingFlagsCOP : protocols::flexpep_docking
• FlexPepDockingFlagsOP : protocols::flexpep_docking
• FlexPepDockingLowResCOP : protocols::flexpep_docking
• FlexPepDockingLowResOP : protocols::flexpep_docking
• FlexPepDockingPoseMetricsCOP : protocols::flexpep_docking
• FlexPepDockingPoseMetricsOP : protocols::flexpep_docking
• FlexPepDockingProtocolCOP : protocols::flexpep_docking
• FlexPepDockingProtocolOP : protocols::flexpep_docking
• FLIP_CHIRALITY : protocols::simple_moves::chiral
• FloatCIter : core::scoring::packstat
• FLOATING_BASE : protocols::swa::monte_carlo
• floating_base_chain_break_screening() : protocols::swa::rna
• floating_base_chain_closure_post_process() : protocols::swa::rna
• floating_base_chain_closure_sampling() : protocols::swa::rna
• floating_base_chain_closure_setup() : protocols::swa::rna
• floating_base_full_atom_van_der_Waals_screening() : protocols::swa::rna
• FloatingResonanceAP : protocols::noesy_assign
• FloatingResonanceCAP : protocols::noesy_assign
• FloatingResonanceCOP : protocols::noesy_assign
• FloatingResonanceOP : protocols::noesy_assign
• FloatIter : core::scoring::packstat
• Floats : core::scoring::packstat
• flood_fill3D() : protocols::sic_dock
• FloppyTailMoverOP : protocols::floppy_tail
• FLT_MAX : core::scoring::electron_density_atomwise
• FlxbbDesign_main() : protocols::flxbb
• FlxbbDesignOP : protocols::flxbb
• fold_tree_entry_point() : core::conformation::symmetry
• fold_tree_from_loops() : protocols::loops , protocols::forge::methods
• fold_tree_from_pose() : protocols::forge::methods
• FoldandDockClaimerAP : protocols::topology_broker
• FoldandDockClaimerCAP : protocols::topology_broker
• FoldandDockClaimerCOP : protocols::topology_broker
• FoldandDockClaimerOP : protocols::topology_broker
• FoldConstraintsCOP : protocols::abinitio
• FoldConstraintsOP : protocols::abinitio
• FoldTreeAP : core::kinematics
• FoldTreeCAP : core::kinematics
• FoldTreeCOP : core::kinematics
• FoldTreeFromLoopsCOP : protocols::loops
• FoldTreeFromLoopsOP : protocols::loops
• FoldTreeHybridizeCOP : protocols::hybridization
• FoldTreeHybridizeOP : protocols::hybridization
• FoldTreeOP : core::kinematics
• follow_EX_flags : protocols::match::upstream
• ForceDisulfideMoverCOP : protocols::simple_moves
• ForceDisulfideMoverOP : protocols::simple_moves
• foreach_movemap_tag() : protocols::rosetta_scripts
• form_disulfide() : core::conformation
• FormatStringOutputterSP : protocols::outputter
• FormFactorCOP : core::scoring::saxs
• FormFactorManagerCOP : core::scoring::saxs
• FormFactorManagerOP : core::scoring::saxs
• FormFactorOP : core::scoring::saxs
• FOUR : core::pack::dunbrack
• FourAtomsConstraintDataCOP : protocols::frag_picker::scores
• FourAtomsConstraintDataOP : protocols::frag_picker::scores
• FourPointsFuncCOP : core::scoring::constraints
• FourPointsFuncOP : core::scoring::constraints
• frac_atoms_within() : protocols::ligand_docking
• FragDataCOP : core::fragment
• FragDataList : core::fragment
• FragDataOP : core::fragment
• FragID_List : core::fragment
• FragInsertAndAlignMoverOP : protocols::rbsegment_relax
• fragment_set_slice() : protocols::swa::protein , core::fragment
• FragmentCandidateCOP : protocols::frag_picker
• FragmentCandidateOP : protocols::frag_picker
• FragmentClaimerAP : protocols::topology_broker
• FragmentClaimerCAP : protocols::topology_broker
• FragmentClaimerCOP : protocols::topology_broker
• FragmentClaimerOP : protocols::topology_broker
• FragmentComparatorBaseCOP : protocols::frag_picker
• FragmentComparatorBaseOP : protocols::frag_picker
• FragmentCostCOP : protocols::simple_moves
• FragmentCostOP : protocols::simple_moves
• FragmentLibraryOP : protocols::rna
• FragmentLibraryPointerMap : protocols::rna
• FragmentMoverCOP : protocols::simple_moves
• FragmentMoverOP : protocols::simple_moves
• FragmentPickerCOP : protocols::frag_picker
• FragmentPickerOP : protocols::frag_picker
• FragmentReaderOP : protocols::jd2::parser
• FragmentRmsdCOP : core::fragment
• FragmentRmsdOP : core::fragment
• FragmentSamplerCOP : protocols::abinitio
• FragmentSamplerOP : protocols::abinitio
• FragmentScoreManagerCOP : protocols::frag_picker::scores
• FragmentScoreManagerOP : protocols::frag_picker::scores
• FragmentScoreMapCOP : protocols::frag_picker::scores
• FragmentScoreMapOP : protocols::frag_picker::scores
• FragmentScoringMethodCOP : protocols::frag_picker::scores
• FragmentScoringMethodOP : protocols::frag_picker::scores
• FragmentSelectingRuleCOP : protocols::frag_picker
• FragmentSelectingRuleOP : protocols::frag_picker
• FragQualFilterCOP : protocols::fldsgn::filters
• FragQualFilterOP : protocols::fldsgn::filters
• FragSetCollectionCOP : core::fragment
• FragSetCollectionOP : core::fragment
• FragSetCOP : core::fragment
• FragSetOP : core::fragment
• FragsToAtomDistAP : protocols::noesy_assign
• FragsToAtomDistCAP : protocols::noesy_assign
• FragsToAtomDistCOP : protocols::noesy_assign
• FragsToAtomDistOP : protocols::noesy_assign
• FrameCOP : core::fragment
• FrameIteratorWorker_OP : core::fragment
• FrameOP : core::fragment
• frdc() : core::scoring
• frdcDa() : core::scoring
• frdcDaR() : core::scoring
• frdcR() : core::scoring
• Freeze_sugar_torsions() : protocols::swa::rna
• ftoa() : protocols::sparta
• full_hit() : protocols::match
• full_length_rmsd_over_residue_list() : protocols::swa::rna
• FullatomCustomPairDistanceEnergyCOP : core::scoring::custom_pair_distance
• FullatomCustomPairDistanceEnergyCreator_registrator : core
• FullatomCustomPairDistanceEnergyOP : core::scoring::custom_pair_distance
• FullatomDisulfideEnergyContainerAP : core::scoring::disulfides
• FullatomDisulfideEnergyContainerCAP : core::scoring::disulfides
• FullatomDisulfideEnergyContainerCOP : core::scoring::disulfides
• FullatomDisulfideEnergyContainerOP : core::scoring::disulfides
• FullatomDisulfideEnergyCOP : core::scoring::disulfides
• FullatomDisulfideEnergyCreator_registrator : core
• FullatomDisulfideEnergyOP : core::scoring::disulfides
• FullatomDisulfidePotentialAP : core::scoring::disulfides
• FullatomDisulfidePotentialCAP : core::scoring::disulfides
• FullatomDisulfidePotentialCOP : core::scoring::disulfides
• FullatomDisulfidePotentialOP : core::scoring::disulfides
• FullatomRelaxMoverOP : protocols::surface_docking
• func_add_resid_to_entity_list : protocols::pack_daemon
• func_entity_for_residue : protocols::pack_daemon
• func_n_residues_for_entity : protocols::pack_daemon
• func_residues_for_entity_begin : protocols::pack_daemon
• func_residues_for_entity_end : protocols::pack_daemon
• FuncOP : core::scoring::constraints