- o -

• o2star_minimize() : protocols::swa::rna
• omega() : protocols::swa::protein , protocols::swa
• omega_torsion() : core::id
• on_pose_accept() : protocols::medal
• oneletter2aa() : core::chemical
• oneletter_code_from_aa() : core::chemical
• oneletter_code_specifies_aa() : core::chemical
• onError() : core::pack::task
• OOP_POST() : core::chemical
• OOP_PRE() : core::chemical
• open_stream() : protocols::noesy_assign
• operator!=() : core::conformation::symmetry , core::kinematics , core::scoring::hbonds , core::scoring::methods , protocols::jd2 , core::chemical , core::conformation::symmetry
• operator*() : core::kinematics
• operator<() : core::chemical , core::kinematics , core::sequence
• operator<<() : core::chemical::carbohydrates , core::pack::interaction_graph , protocols::antibody2 , core::pack::interaction_graph , protocols::antibody2 , core::chemical , core::pack::task , protocols::canonical_sampling , protocols::dna , core::pose , protocols::dna , core::conformation , core::pose , protocols::dna , core::scoring , protocols::docking , core::conformation , core::scoring , protocols::docking , core::scoring::constraints , protocols::docking , core::conformation , core::scoring::constraints , protocols::docking , core::scoring::constraints , protocols::docking , protocols::features::helixAssembly , core::conformation::symmetry , core::scoring::constraints , protocols::fldsgn::topology , core::scoring , protocols::fldsgn::topology , core::conformation::symmetry , core::scoring , protocols::fldsgn::topology , core::scoring::dssp , protocols::fldsgn::topology , core::fragment , core::scoring::dssp , protocols::fldsgn::topology , core::scoring::dssp , protocols::fldsgn::topology , core::fragment , core::scoring::dssp , protocols::fldsgn::topology , core::scoring , protocols::fldsgn::topology , protocols::topology_broker , protocols::fldsgn::topology , protocols::toolbox , protocols::simple_moves , protocols::simple_moves::carbohydrates , protocols::simple_moves , protocols::sic_dock , protocols::scoring , core::fragment , core::scoring , protocols::scoring::methods::pcs2 , protocols::frag_picker , protocols::scoring::methods::pcs2 , protocols::scoring::methods::pcs , protocols::frag_picker , core::scoring::etable::etrie , protocols::rigid , protocols::pmut_scan , protocols::genetic_algorithm , protocols::noesy_assign , protocols::moves , protocols::hotspot_hashing , core::fragment , core::scoring::etable::etrie , protocols::moves , protocols::motifs , protocols::loops , protocols::loops::loop_mover::refine , protocols::hotspot_hashing , protocols::loops::loop_mover::refine , protocols::loops::loop_mover::perturb , protocols::loops::loop_closure::ccd , protocols::jd2::archive , core::scoring::etable::etrie , protocols::jumping , protocols::jd2 , core::fragment::picking_old::vall::scores , core::scoring::etable::etrie , protocols::jumping , core::scoring::etable::etrie , core::fragment , core::scoring::hackelec , protocols::ligand_docking::ligand_options , protocols::loops , core::scoring::hbonds , core::fragment , core::scoring::hbonds , core::id , core::scoring::hbonds , protocols::loops::loop_mover::refine , core::scoring::hbonds::hbtrie , core::id , core::scoring::hbonds::hbtrie , core::scoring::hbonds , core::id , core::scoring::methods , protocols::moves , core::scoring::mm , protocols::moves , core::id , core::scoring::mm::mmtrie , core::scoring::packstat , core::id , core::scoring::packstat , protocols::optimize_weights , core::scoring::packstat , core::id , core::scoring::packstat , core::id , core::scoring , protocols::scoring::methods::pcs , core::scoring , core::id , core::scoring , protocols::antibody2 , protocols::abinitio , protocols::topology_broker , protocols::abinitio , core::sequence , core::io::pdb , core::scoring , protocols::scoring::methods::pcs2 , core::scoring , core::io::pdb , core::scoring , core::io::pdb , core::scoring , protocols::scoring::methods::pcs2 , core::kinematics , core::chemical , core::kinematics , core::chemical , core::kinematics , protocols::abinitio , core::kinematics , core::chemical , core::kinematics , core::optimization
• operator==() : core::scoring::hbonds , boost::tuples , core::scoring::methods , core::scoring , core::scoring::hbonds , core::conformation::symmetry , core::scoring::hbonds , core::conformation::symmetry , core::kinematics , core::chemical , core::conformation::symmetry , boost::tuples , protocols::jd2
• operator>>() : protocols::noesy_assign , protocols::toolbox , core::scoring::dssp , protocols::abinitio , core::conformation::symmetry , core::fragment , core::kinematics , protocols::abinitio , core::scoring::dssp , protocols::abinitio , protocols::sasa_scores , protocols::toolbox , core::scoring::packstat , core::id , core::chemical , core::kinematics , protocols::hotspot_hashing , core::kinematics , protocols::topology_broker , protocols::sasa_scores , core::sequence , core::scoring , core::sequence , protocols::hotspot_hashing , core::kinematics , core::scoring::packstat , core::id , protocols::noesy_assign , protocols::jd2::archive
• oprod() : protocols::toolbox
• optE_RG() : protocols::optimize_weights
• optimal_connection_point() : protocols::protein_interface_design
• optimal_water_distance() : core::scoring::methods
• optimize_H_and_notify() : core::pack
• optimizeH() : core::pack
• order() : protocols::forge::methods
• orient_residue_for_ideal_bond() : core::conformation
• Output_bool_list() : protocols::swa::rna
• Output_boolean() : protocols::swa::rna , protocols::swa
• Output_data() : protocols::swa::rna
• output_error_message() : protocols::scoring::methods::pcs2
• Output_fold_tree_info() : protocols::swa::rna
• output_intermediate_pose() : protocols::jd2
• Output_is_prepend_map() : protocols::swa::rna
• Output_movemap() : protocols::swa , protocols::swa::rna
• output_packstat() : protocols::vip
• output_packstat_pdb() : core::scoring::packstat
• output_pair_size() : protocols::swa::rna
• output_pair_size_vector() : protocols::swa::rna
• output_res_map() : protocols::swa::rna
• Output_residue_list() : protocols::swa::rna
• Output_residue_struct() : protocols::swa::rna
• output_rotamer() : protocols::swa::rna
• Output_seq_num_list() : protocols::swa::rna
• output_silent_struct() : protocols::swa::protein
• Output_size_list() : protocols::swa::rna
• Output_title_text() : protocols::swa::rna
• overlap() : core::scoring::packstat
• overlap_chainbreak() : protocols::forge::methods