Application Samples

Released aplications have a sample set up in release directory "rosetta-3.0/rosetta3_samples". Each sample sirectory has specific input files, option flags file and a readme file. You can run it with corresponding application executable.

Abinitio Samples

• Application Name: AbinitioRelax.cc
• Sample Locations:

  1. rosetta3_samples/abinitio
  2. rosetta3_samples/metalloprotein_abrelax
  3. rosetta3_samples/fold_cst_new
  

Backrub Samples

• Application Name: backrub.cc
• Sample Locations:

  1. rosetta3_samples/backrub
  

Relaxation Samples

• Application Name: relax.cc
• Sample Locations:

  1. rosetta3_samples/ClassicRelax
  

Docking Samples

• Application Name: docking_protocol.cc
• Sample Locations:

  1. rosetta3_samples/Docking
  

Docking Design Scripting Samples

• Application Name: dock_design_scripting.cc
• Sample Locations:

  1. rosetta3_samples/Docking_Design_Scripting
  

Fixed Backbone Design Samples

• Application Name: fixbb.cc2
• Sample Locations:

  1. rosetta3_samples/FixedBackboneDesign
  

Idealization Samples

• Application Name: idealize.cc
• Sample Locations:

  1. rosetta3_samples/Idealization
  

Ligand Docking Samples

• Application Name: ligand_dock.cc
• Sample Locations:

  1. rosetta3_samples/Ligand_Docking
  2. rosetta3_samples/molfile_to_params  (this is just for transfering mol file to param files)
  

Loop Modeling Samples

• Application Name: loopmodel.cc
• Sample Locations:

  1. rosetta3_samples/LoopModeling
  

RNA Samples

• Application Name: rna_design.cc, rna_denovo.cc
• Sample Locations:

  1. rosetta3_samples/RNA_Design
  2. rosetta3_samples/RNA_Denovo
  

Scoring Samples

• Application Name: score.cc
• Sample Locations:

  1. rosetta3_samples/Scoring
  

Silent File Operation Samples

• Application Name: combine_silent.cc, extract_pdbs.cc
• Sample Locations:

  1. rosetta3_samples/SilentFileTools
  

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