Locations Of Files In Rosetta 3

This page lists the trees of directories of each individula applications and scripts in Rosetta 3.

Release Applications

Abinitio Application

• Name: AbinitioRelax.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/Abinitio 

Backrub Application

• Name: backrub.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/backrub 

Clustering Application

• Name: cluster.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/clustering 

Fixed Backbone Design Application

• Name: fixbb.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/design 

Dock Design Scripting Application

• Name: dock_design_scripting.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/dock_design_scripting 

Docking Application

• Name: docking_protocol.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/docking 

Idealization Application

• Name: idealize.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/idealization 

Ligand Docking Application

• Name:ligand_dock.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/ligand_docking 

Loop Modeling

• Name:loopmodel.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/loop_modeling 

Relaxation Application

• Name:relax.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/relaxation 

RNA Denovo Application

• Name:rna_denovo.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/rna 

RNA Design Application

• Name:rna_design.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/rna 

Scoring Application

• Name:score.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/scoring 

Silent File Applications

• Names:
  1. combine_silent.cc
  2. extract_pdbs.cc
• Location in the source pakage:

  rosetta3_source/src/apps/public/SilentFileTools 

Release Scripts

Ligand Docking Supplementary Scripts

• Names:
  1. arls_impl.py
  2. arls.py
  3. assign_charges.py
  4. best_ifaceE.py
  5. get_scores.py
  6. pdb_to_molfile.py
  7. prune_atdiff_top5pct.py
• Location in the source pakage:

  rosetta3_source/src/apps/public/ligand_docking 

PDB Scripts

• Name:
  1. addChain.pl
  2. cleanPdbCA.pl
  3. createTemplate.pl
  4. getCAcoords.pl
  5. getFastaFromCoords.pl
  6. getFirstChain.pl
  7. getPdb.pl
  8. removeChain.pl
  9. removeExtendedChain.pl
  10. removeTERs.pl
• Location in the source pakage:

  BioTools/ 

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